args passed: '/Applications/Foldit.app/Contents/MacOS/Foldit' args used: '/Applications/Foldit.app/Contents/MacOS/Foldit' '-resources' 'cmp-resources-1fd546a9c0ff2fb29a2217c75775d81f/resources' '-database' 'cmp-database-9cc626267aa5f6df9bcb5f94584712fd/database' '-interactive_game' 'novice' '-interactive:interactive_residue_types' '-ignore_unrecognized_res' '-ignore_zero_occupancy' 'false' '-in::use_truncated_termini' '-out:levels' 'all:warning' 'interactive:info' 'standalone:info' 'game:info' '-out:no_color' '-load_PDB_components' 'false' interactive.util.options_dict: {0} Loading options file standalone.application.StandaloneViewPresetList: {0} StandaloneViewPresetList->load_preset_files(): successfully loaded view preset files standalone.application.StandaloneViewPresetList: {0} StandaloneViewPresetList->load_preset_files(): successfully loaded view preset files game.application.GameApplication: {0} Initializing interactive.sound/SoundTheme: {0} SoundTheme::load: cmp-resources-1fd546a9c0ff2fb29a2217c75775d81f/resources/sounds/organic_01 interactive.sound/SoundTheme: {0} loading: cmp-resources-1fd546a9c0ff2fb29a2217c75775d81f/resources/sounds/organic_01/rotamer_land_00.ogg interactive.sound/SoundTheme: {0} loading: cmp-resources-1fd546a9c0ff2fb29a2217c75775d81f/resources/sounds/organic_01/rotamer_land_01.ogg interactive.sound/SoundTheme: {0} loading: cmp-resources-1fd546a9c0ff2fb29a2217c75775d81f/resources/sounds/organic_01/rotamer_land_02.ogg interactive.sound/SoundTheme: {0} loading: cmp-resources-1fd546a9c0ff2fb29a2217c75775d81f/resources/sounds/organic_01/rotamer_land_03.ogg interactive.sound/SoundTheme: {0} loading: cmp-resources-1fd546a9c0ff2fb29a2217c75775d81f/resources/sounds/organic_01/rotamer_land_04.ogg interactive.sound/SoundTheme: {0} loading: cmp-resources-1fd546a9c0ff2fb29a2217c75775d81f/resources/sounds/organic_01/rotamer_land_05.ogg standalone.application.StandaloneApplication: {0} (@init_machine_log)intro_level_version_ is 0 interactive.util.options_dict: {0} We're loading in the hotkeys interactive.util.options_dict: {0} We loaded in the hotkeys interactive.rosetta_util.ExposedHydrophobicsCalculator: {0} SVM classifier successfully loaded interactive.rosetta_util.ExposedHydrophobicsCalculator: {0} Feature list successfully loaded interactive.rosetta_util.ExposedHydrophobicsCalculator: {0} Valid classifier feature list interactive.remote.RemoteThread: {0} REMOTE Local Address: 127.0.0.1 interactive.application.shared.HotkeyTable: {0} Could not bind UNDO_UNDO_ALT to hotkey [Cmd+Z] - hotkey is already bound to UNDO_UNDO interactive.application.shared.HotkeyTable: {0} Could not bind UNDO_REDO_ALT to hotkey [Cmd+Y] - hotkey is already bound to UNDO_REDO standalone.application.StandaloneApplication: {0} about to create view_options_button_ interactive.application.shared.HotkeyTable: {0} Could not bind ACTION_INSERT_RESIDUE to hotkey [I] - hotkey is already bound to UNDO_RESTORE_BEST_CREDIT interactive.application.shared.ToolApplication: {0} setting side chain mode to: 0 Don't Show (Fast) interactive.remote.RemoteDialog: {0} Found remote enable option: 0 game.application.AlphaFoldDialog: {0} POS UDim< rel:0 abs:345 self:0 >:UDim< rel:0 abs:-6 self:0 > game.application.server.Updater: {0} checking updates... game.application.server.CurlFetcher: {0} https://fold.it/api/get_update_components game.application.server.Updater: {0} binary game.application.server.Updater: {0} local: '810cfd26d78170c02845ffaf3eb9c368' game.application.server.Updater: {0} remote: '810cfd26d78170c02845ffaf3eb9c368' game.application.server.Updater: {0} database game.application.server.Updater: {0} local: '9cc626267aa5f6df9bcb5f94584712fd' game.application.server.Updater: {0} remote: '9cc626267aa5f6df9bcb5f94584712fd' game.application.server.Updater: {0} resources game.application.server.Updater: {0} local: '1fd546a9c0ff2fb29a2217c75775d81f' game.application.server.Updater: {0} remote: '1fd546a9c0ff2fb29a2217c75775d81f' game.application.server.Updater: {0} cleaning up old components: game.application.server.Updater: {0} resources 1fd546a9c0ff2fb29a2217c75775d81f game.application.server.Updater: {0} database 9cc626267aa5f6df9bcb5f94584712fd game.application.server.Updater: {0} binary 810cfd26d78170c02845ffaf3eb9c368 game.application.server.CurlFetcher: {0} https://fold.it/api/get_news standalone.application.StandaloneApplication: {0} Show splash! standalone.application.StandaloneApplication: {0} Playing: sounds/organic_01/splashscreen.ogg standalone.application.StandaloneApplication: {0} Converting any old-style quicksaves and autosaves... standalone.application.GeneralOptionsPanel: {0} buildid: V44-20250213-cae7350b02-macos_x64 game.application.GameApplication: {0} Ended pre-login init game.application.server.CurlFetcher: {0} https://fold.it/api/get_user_info game.application.GameApplication: {0} Logged in with player ID: 172532 game.application.server.CurlFetcher: {0} https://fold.it/api/get_user_info game.application.server.CurlFetcher: {0} https://fold.it/api/get_puzzles standalone.application.boinc.Puzzle: {0} .ocmdline d0c38b589470b99976db250c17c71d3d standalone.application.boinc.Puzzle: {0} .ofilters eb8c2fc8a467c4cf237618a29c45f665 standalone.application.boinc.Puzzle: {0} .opdb a7916996dc6adb777c51f4c4a575fa84 standalone.application.boinc.Puzzle: {0} .opuzzle_setup eddf1be56eb7d97f3a0ce625e923bff7 standalone.application.boinc.Puzzle: {0} .owts d2f7165a0e0f8d0203c093ba8d54267f standalone.application.boinc.Puzzle: {0} .opdb 2cb8ff8457d30a4bf7f2ba9e4df53760 standalone.application.boinc.Puzzle: {0} .opuzzle_setup 9090234d1eabcc31aeb31cc118fa57e2 standalone.application.boinc.Puzzle: {0} .owts d2f7165a0e0f8d0203c093ba8d54267f standalone.application.boinc.Puzzle: {0} .opdb 54dba4dcebad32bcdde53965ccb21607 standalone.application.boinc.Puzzle: {0} .opuzzle_setup 0cf734fcccc42fbe2f314ba6a61438d3 standalone.application.boinc.Puzzle: {0} .owts d2f7165a0e0f8d0203c093ba8d54267f standalone.application.boinc.Puzzle: {0} .odensity 0ec96a8677ee654aeb9f398c35788c9a standalone.application.boinc.Puzzle: {0} .opdb 8cb39d7c3c76080f0ce3b66d76485633 standalone.application.boinc.Puzzle: {0} .opuzzle_setup d8f3716eaf7d2d2878c34987b34c8ae4 standalone.application.boinc.Puzzle: {0} .owts d2f7165a0e0f8d0203c093ba8d54267f standalone.application.boinc.Puzzle: {0} .owts_patch b492b64225a26b2b882d56da3585b00a standalone.application.boinc.Puzzle: {0} .ocmdline e14ffdcac91bac948806a2ff7ed87ea4 standalone.application.boinc.Puzzle: {0} .opdb baf2b55ed9d608eccf6b6b91dac460d3 standalone.application.boinc.Puzzle: {0} .opuzzle_setup 55ebdc3066184544e214ab59b3e564d6 standalone.application.boinc.Puzzle: {0} .owts d2f7165a0e0f8d0203c093ba8d54267f standalone.application.boinc.Puzzle: {0} .sym 9416a20b4855d4d4b0754de653e7dd55 standalone.application.boinc.Puzzle: {0} .odensity b1665606cd6fc9ecad31cb786cabcd5e standalone.application.boinc.Puzzle: {0} .opdb e6e5ddb6526039e601ec7ebdb0f6c8e4 standalone.application.boinc.Puzzle: {0} .opuzzle_setup beba35efb5c3dc08b28f827c509250d8 standalone.application.boinc.Puzzle: {0} .owts 176403f366c9d25492c31b94f83a88c2 standalone.application.boinc.Puzzle: {0} .opdb 352fe8f34607a31f4a0fb858fecd9f8f standalone.application.boinc.Puzzle: {0} .opuzzle_setup 08586216d9939ed1b557037a98b94cc2 standalone.application.boinc.Puzzle: {0} .owts 5b16284e5e5e4f85b6793eba788a0ce0 standalone.application.boinc.Puzzle: {0} .ocmdline 9213d67f559515a2b1c07bd45bdb7cf9 standalone.application.boinc.Puzzle: {0} .ocnstr adee7993ef58481848b77be273ca0301 standalone.application.boinc.Puzzle: {0} .ofilters 7ac1df082f19ea354c52ff327c3f8072 standalone.application.boinc.Puzzle: {0} .opdb 16436660143808fe77ad2b2d3c6db17b standalone.application.boinc.Puzzle: {0} .opuzzle_setup 63dc36329331e9ebb264d652e4aa7668 standalone.application.boinc.Puzzle: {0} .owts d2f7165a0e0f8d0203c093ba8d54267f standalone.application.boinc.Puzzle: {0} .ofilters c745e3297aec20cd73c52c9584d64ea2 standalone.application.boinc.Puzzle: {0} .opdb 981db66843793696568a875cbe647fc8 standalone.application.boinc.Puzzle: {0} .opuzzle_setup 0ff7339e16a5ee3beaed11a7ed894b9a standalone.application.boinc.Puzzle: {0} .owts e67a43609f0d4640548a0b6ce55cf7ba standalone.application.boinc.Puzzle: {0} .params 99f96c5eed7c1d99779294ac67912c71 game.application.server.CurlFetcher: {0} https://fold.it/api/get_puzzle_scores game.application.server.CurlFetcher: {0} https://fold.it/api/get_puzzle_scores game.application.server.CurlFetcher: {0} https://fold.it/api/get_puzzle_scores game.application.server.CurlFetcher: {0} https://fold.it/api/get_puzzle_scores game.application.server.CurlFetcher: {0} https://fold.it/api/get_puzzle_scores game.application.server.CurlFetcher: {0} https://fold.it/api/get_puzzle_scores game.application.server.CurlFetcher: {0} https://fold.it/api/get_puzzle_scores game.application.server.CurlFetcher: {0} https://fold.it/api/get_puzzle_scores game.application.server.CurlFetcher: {0} https://fold.it/api/get_puzzle_scores game.application.server.CurlFetcher: {0} https://fold.it/api/get_puzzles standalone.application.boinc.Puzzle: {0} .ocmdline d0c38b589470b99976db250c17c71d3d standalone.application.boinc.Puzzle: {0} .ofilters eb8c2fc8a467c4cf237618a29c45f665 standalone.application.boinc.Puzzle: {0} .opdb a7916996dc6adb777c51f4c4a575fa84 standalone.application.boinc.Puzzle: {0} .opuzzle_setup eddf1be56eb7d97f3a0ce625e923bff7 standalone.application.boinc.Puzzle: {0} .owts d2f7165a0e0f8d0203c093ba8d54267f standalone.application.boinc.Puzzle: {0} .opdb 2cb8ff8457d30a4bf7f2ba9e4df53760 standalone.application.boinc.Puzzle: {0} .opuzzle_setup 9090234d1eabcc31aeb31cc118fa57e2 standalone.application.boinc.Puzzle: {0} .owts d2f7165a0e0f8d0203c093ba8d54267f standalone.application.boinc.Puzzle: {0} .opdb 54dba4dcebad32bcdde53965ccb21607 standalone.application.boinc.Puzzle: {0} .opuzzle_setup 0cf734fcccc42fbe2f314ba6a61438d3 standalone.application.boinc.Puzzle: {0} .owts d2f7165a0e0f8d0203c093ba8d54267f standalone.application.boinc.Puzzle: {0} .odensity 0ec96a8677ee654aeb9f398c35788c9a standalone.application.boinc.Puzzle: {0} .opdb 8cb39d7c3c76080f0ce3b66d76485633 standalone.application.boinc.Puzzle: {0} .opuzzle_setup d8f3716eaf7d2d2878c34987b34c8ae4 standalone.application.boinc.Puzzle: {0} .owts d2f7165a0e0f8d0203c093ba8d54267f standalone.application.boinc.Puzzle: {0} .owts_patch b492b64225a26b2b882d56da3585b00a standalone.application.boinc.Puzzle: {0} .ocmdline e14ffdcac91bac948806a2ff7ed87ea4 standalone.application.boinc.Puzzle: {0} .opdb baf2b55ed9d608eccf6b6b91dac460d3 standalone.application.boinc.Puzzle: {0} .opuzzle_setup 55ebdc3066184544e214ab59b3e564d6 standalone.application.boinc.Puzzle: {0} .owts d2f7165a0e0f8d0203c093ba8d54267f standalone.application.boinc.Puzzle: {0} .sym 9416a20b4855d4d4b0754de653e7dd55 standalone.application.boinc.Puzzle: {0} .odensity b1665606cd6fc9ecad31cb786cabcd5e standalone.application.boinc.Puzzle: {0} .opdb e6e5ddb6526039e601ec7ebdb0f6c8e4 standalone.application.boinc.Puzzle: {0} .opuzzle_setup beba35efb5c3dc08b28f827c509250d8 standalone.application.boinc.Puzzle: {0} .owts 176403f366c9d25492c31b94f83a88c2 standalone.application.boinc.Puzzle: {0} .opdb 352fe8f34607a31f4a0fb858fecd9f8f standalone.application.boinc.Puzzle: {0} .opuzzle_setup 08586216d9939ed1b557037a98b94cc2 standalone.application.boinc.Puzzle: {0} .owts 5b16284e5e5e4f85b6793eba788a0ce0 standalone.application.boinc.Puzzle: {0} .ocmdline 9213d67f559515a2b1c07bd45bdb7cf9 standalone.application.boinc.Puzzle: {0} .ocnstr adee7993ef58481848b77be273ca0301 standalone.application.boinc.Puzzle: {0} .ofilters 7ac1df082f19ea354c52ff327c3f8072 standalone.application.boinc.Puzzle: {0} .opdb 16436660143808fe77ad2b2d3c6db17b standalone.application.boinc.Puzzle: {0} .opuzzle_setup 63dc36329331e9ebb264d652e4aa7668 standalone.application.boinc.Puzzle: {0} .owts d2f7165a0e0f8d0203c093ba8d54267f standalone.application.boinc.Puzzle: {0} .ofilters c745e3297aec20cd73c52c9584d64ea2 standalone.application.boinc.Puzzle: {0} .opdb 981db66843793696568a875cbe647fc8 standalone.application.boinc.Puzzle: {0} .opuzzle_setup 0ff7339e16a5ee3beaed11a7ed894b9a standalone.application.boinc.Puzzle: {0} .owts e67a43609f0d4640548a0b6ce55cf7ba standalone.application.boinc.Puzzle: {0} .params 99f96c5eed7c1d99779294ac67912c71 standalone.application.intro.level_util: {0} JM level version = 0 standalone.application.intro.level_util: {0} Using file: cmp-resources-1fd546a9c0ff2fb29a2217c75775d81f/resources/levels/campaign_2020.intros standalone.application.intro.level_util: {0} Using file: cmp-resources-1fd546a9c0ff2fb29a2217c75775d81f/resources/levels/educational_puzzles.intros standalone.application.intro.level_util: {0} Using file: cmp-resources-1fd546a9c0ff2fb29a2217c75775d81f/resources/levels/endless_puzzles.intros game.application.server.CurlFetcher: {0} https://fold.it/api/get_puzzle_completions standalone.application.boinc.Puzzle: {0} has key .odensity standalone.application.boinc.Puzzle: {0} has key .owts standalone.application.boinc.Puzzle: {0} has key .opdb core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue PHE 3 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD1 on residue PHE 3 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD2 on residue PHE 3 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CE1 on residue PHE 3 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CE2 on residue PHE 3 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CZ on residue PHE 3 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue GLU 30 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD on residue GLU 30 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE1 on residue GLU 30 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE2 on residue GLU 30 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue GLU 76 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD on residue GLU 76 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE1 on residue GLU 76 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE2 on residue GLU 76 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OG on residue SER 87 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OH on residue TYR 93 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue ASN 117 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OD1 on residue ASN 117 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: ND2 on residue ASN 117 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue LYS 175 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD on residue LYS 175 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CE on residue LYS 175 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: NZ on residue LYS 175 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG1 on residue VAL 320 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG2 on residue VAL 320 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue PHE 368 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD1 on residue PHE 368 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD2 on residue PHE 368 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CE1 on residue PHE 368 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CE2 on residue PHE 368 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CZ on residue PHE 368 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue GLU 395 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD on residue GLU 395 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE1 on residue GLU 395 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE2 on residue GLU 395 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue GLU 441 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD on residue GLU 441 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE1 on residue GLU 441 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE2 on residue GLU 441 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OG on residue SER 452 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OH on residue TYR 458 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue ASN 482 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OD1 on residue ASN 482 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: ND2 on residue ASN 482 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue LYS 540 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD on residue LYS 540 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CE on residue LYS 540 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: NZ on residue LYS 540 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG1 on residue VAL 685 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG2 on residue VAL 685 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue PHE 733 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD1 on residue PHE 733 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD2 on residue PHE 733 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CE1 on residue PHE 733 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CE2 on residue PHE 733 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CZ on residue PHE 733 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue GLU 760 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD on residue GLU 760 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE1 on residue GLU 760 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE2 on residue GLU 760 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue GLU 806 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD on residue GLU 806 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE1 on residue GLU 806 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE2 on residue GLU 806 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OG on residue SER 817 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OH on residue TYR 823 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue ASN 847 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OD1 on residue ASN 847 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: ND2 on residue ASN 847 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue LYS 905 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD on residue LYS 905 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CE on residue LYS 905 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: NZ on residue LYS 905 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG1 on residue VAL 1050 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG2 on residue VAL 1050 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue PHE 1098 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD1 on residue PHE 1098 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD2 on residue PHE 1098 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CE1 on residue PHE 1098 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CE2 on residue PHE 1098 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CZ on residue PHE 1098 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue GLU 1125 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD on residue GLU 1125 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE1 on residue GLU 1125 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE2 on residue GLU 1125 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue GLU 1171 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD on residue GLU 1171 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE1 on residue GLU 1171 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OE2 on residue GLU 1171 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OG on residue SER 1182 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OH on residue TYR 1188 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue ASN 1212 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: OD1 on residue ASN 1212 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: ND2 on residue ASN 1212 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG on residue LYS 1270 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CD on residue LYS 1270 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CE on residue LYS 1270 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: NZ on residue LYS 1270 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG1 on residue VAL 1415 core.conformation.Conformation: {0} [ WARNING ] missing heavyatom: CG2 on residue VAL 1415 interactive.rosetta_util.rosetta_game_pose: {0} Autogenerating secondary structure information for input structure. interactive.rosetta_util.rosetta_game_pose: {0} Adding secstruct through DSSP interactive.rosetta_util.rosetta_game_pose: {0} Finished adding secstruct through DSSP standalone.application.boinc.Puzzle: {0} has key .opuzzle_setup standalone.application.boinc.Puzzle: {0} starting score : 19497.6 standalone.application.boinc.Puzzle: {0} puzzle loaded interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 1 input stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 2 stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 4 input stub atoms nearly colinear at 0.370636 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/default/autosave.ir_solution loaded. game.application.GameApplication: {0} Loading puzzle 2014053 interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 1 input stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 2 stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 4 input stub atoms nearly colinear at 0.370636 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/default/autosave-best.ir_solution loaded. interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 1 input stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 2 stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 4 input stub atoms nearly colinear at 0.370636 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/default/autosave-recentbest.ir_solution loaded. interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 1 input stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 2 stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 4 input stub atoms nearly colinear at 0.370636 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/default/autosave-creditbest.ir_solution loaded. interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 1 input stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 2 stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 4 input stub atoms nearly colinear at 0.370636 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/default/autosave-best.ir_solution loaded. interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 1 input stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 2 stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 4 input stub atoms nearly colinear at 0.370636 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/default/autosave-recentbest.ir_solution loaded. interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 1 input stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 2 stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 4 input stub atoms nearly colinear at 0.370636 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/default/autosave-creditbest.ir_solution loaded. interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 1 input stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 2 stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 4 input stub atoms nearly colinear at 0.370636 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/default/autosave-best.ir_solution loaded. interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 1 input stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 2 stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 4 input stub atoms nearly colinear at 0.370636 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/default/autosave-recentbest.ir_solution loaded. interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 1 input stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 2 stub atoms nearly colinear at 2.44737 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} ************************************************** interactive.rosetta_util.rosetta_util: {0} WARNING: residue 1045 atom 4 input stub atoms nearly colinear at 0.370636 degrees interactive.rosetta_util.rosetta_util: {0} ************************************************** standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/default/autosave-creditbest.ir_solution loaded. interactive.application.actions.loop_hash_utils: {0} building library...interactive.application.actions.loop_hash_utils: {0} done. standalone.application.TitlePanel: {0} TitlePanel new session standalone.application.ScorePanel: {0} ScorePanel new session standalone.application.ViewOptionsPanelButton: {0} ViewOptionsPanelButton new session standalone.application.HelpPanelButton: {0} HelpPanelButton new session standalone.application.ActionOptionsPanelButton: {0} ActionOptionsPanelButton new session standalone.application.UndoPanelButton: {0} UndoPanelButton new session standalone.application.CookbookPanelButton: {0} CookbookPanelButton new session standalone.application.HamburgerPanelButton: {0} HamburgerPanelButton new session interactive.application.appposeview.ElectronDensityGeom: {0} set up new density... interactive.application.appposeview.ElectronDensityGeom: {0} updating surface... game.application.server.PrereleaseDialog: {0} PHASE PRE? : 0 game.application.server.PrereleaseDialog: {0} Normal game.application.server.PrereleaseDialog: {0} PreRelease game.application.server.CurlFetcher: {Rosetta thread index was requested, but this is neither a thread that Rosetta launched, nor the thread from which Rosetta launched threads! This can happen if external code (e.g. PyRosetta) has already launched threads. 0} https://fold.it/api/get_recipes game.application.GameApplication: {0} GROUP CHAT CHANNEL: GoScience game.application.server.CurlFetcher: {Rosetta thread index was requested, but this is neither a thread that Rosetta launched, nor the thread from which Rosetta launched threads! This can happen if external code (e.g. PyRosetta) has already launched threads. 0} https://fold.it/api/get_puzzle_scores game.application.server.CurlFetcher: {Rosetta thread index was requested, but this is neither a thread that Rosetta launched, nor the thread from which Rosetta launched threads! This can happen if external code (e.g. PyRosetta) has already launched threads. 0} https://fold.it/api/get_irc_server interactive.application.appposeview.ElectronDensityGeom: {Rosetta thread index was requested, but this is neither a thread that Rosetta launched, nor the thread from which Rosetta launched threads! This can happen if external code (e.g. PyRosetta) has already launched threads. 0} updating surface... game.application.GameApplication: {0} BOINC says connect to: irc.fold.it:6667 game.application.GameApplication: {0} Using nick: NinjaGreg game.application.GameApplication: {0} Ended Initialization of GameApplication game.util.IRC: {Rosetta thread index was requested, but this is neither a thread that Rosetta launched, nor the thread from which Rosetta launched threads! This can happen if external code (e.g. PyRosetta) has already launched threads. 0} IRC::disconnect game.util.IRC: {Rosetta thread index was requested, but this is neither a thread that Rosetta launched, nor the thread from which Rosetta launched threads! This can happen if external code (e.g. PyRosetta) has already launched threads. 0} IRC::connect game.util.IRC: {Rosetta thread index was requested, but this is neither a thread that Rosetta launched, nor the thread from which Rosetta launched threads! This can happen if external code (e.g. PyRosetta) has already launched threads. 0} IRC::connect connecting game.util.IRC: {Rosetta thread index was requested, but this is neither a thread that Rosetta launched, nor the thread from which Rosetta launched threads! This can happen if external code (e.g. PyRosetta) has already launched threads. Silencing further instances of this warning. 0} Entering IRC::run game.util.IRC: {0} IRC::run recv error game.util.IRC: {0} Exiting IRC::run standalone.application.StandaloneApplication: {0} Current Track: Solo1 standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/Solo1/autosave.ir_solution loaded. game.application.GameApplication: {0} Loading puzzle 2014053 standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/Solo1/autosave-best.ir_solution loaded. standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/Solo1/autosave-recentbest.ir_solution loaded. standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/Solo1/autosave-creditbest.ir_solution loaded. standalone.application.StandaloneApplication: {0} Quicksave puzzles/0002014053/0000172532/Solo1/quicksave.ir_solution loaded. standalone.application.StandaloneApplication: {0} Quicksave puzzles/0002014053/0000172532/Solo1/quicksave2.ir_solution loaded. standalone.application.StandaloneApplication: {0} Quicksave puzzles/0002014053/0000172532/Solo1/quicksave8.ir_solution loaded. standalone.application.StandaloneApplication: {0} Quicksave puzzles/0002014053/0000172532/Solo1/quicksave10.ir_solution loaded. standalone.application.StandaloneApplication: {0} Quicksave puzzles/0002014053/0000172532/Solo1/quicksave97.ir_solution loaded. standalone.application.StandaloneApplication: {0} Quicksave puzzles/0002014053/0000172532/Solo1/quicksave99.ir_solution loaded. standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/Solo1/autosave-best.ir_solution loaded. standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/Solo1/autosave-recentbest.ir_solution loaded. standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/Solo1/autosave-creditbest.ir_solution loaded. standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/Solo1/autosave-best.ir_solution loaded. standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/Solo1/autosave-recentbest.ir_solution loaded. standalone.application.StandaloneApplication: {0} Autosave puzzles/0002014053/0000172532/Solo1/autosave-creditbest.ir_solution loaded. standalone.application.TitlePanel: {0} TitlePanel new session standalone.application.ScorePanel: {0} ScorePanel new session standalone.application.ViewOptionsPanelButton: {0} ViewOptionsPanelButton new session standalone.application.HelpPanelButton: {0} HelpPanelButton new session standalone.application.ActionOptionsPanelButton: {0} ActionOptionsPanelButton new session standalone.application.UndoPanelButton: {0} UndoPanelButton new session standalone.application.CookbookPanelButton: {0} CookbookPanelButton new session standalone.application.HamburgerPanelButton: {0} HamburgerPanelButton new session interactive.application.appposeview.ElectronDensityGeom: {0} set up new density... interactive.application.appposeview.ElectronDensityGeom: {0} updating surface... game.application.server.PrereleaseDialog: {0} PHASE PRE? : 0 game.application.server.PrereleaseDialog: {0} Normal game.application.server.PrereleaseDialog: {0} PreRelease game.application.server.CurlFetcher: {0} https://fold.it/api/get_recipes game.application.GameApplication: {0} GROUP CHAT CHANNEL: GoScience game.application.server.CurlFetcher: {0} https://fold.it/api/get_puzzle_scores standalone.application.MoveCountTracker: {0} Action not in MoveCountTracker map: ActionTrimPose standalone.application.MoveCountTracker: {0} Action not in MoveCountTracker map: ActionTrimPose standalone.application.MoveCountTracker: {0} Action not in MoveCountTracker map: ActionTrimPose standalone.application.MoveCountTracker: {0} Action not in MoveCountTracker map: ActionTrimPose *** Got OpenGL error: invalid operation at /Users/apetrides/foldit/rosetta-interactive/source/src/interactive/gui/TopLevel.cc:170 *** Got OpenGL error in context: 0 game_library.dylib 0x000000011f8578e4 backtrace_string(int) + 71 1 game_library.dylib 0x0000000122a86677 interactive::render::check_for_open_gl_errors(char const*, int) + 315 2 game_library.dylib 0x0000000122a6db58 interactive::gui::TopLevel::on_render() + 392 3 game_library.dylib 0x0000000122a8b3e0 cocoa_wrapper_render + 320 4 game_library.dylib 0x0000000122a8a791 -[CocoaOpenGLView drawRect:] + 68 5 AppKit 0x00007ff8086154df -[_NSOpenGLViewBackingLayer display] + 825 6 QuartzCore 0x00007ff80d730d49 CA::Layer::display_if_needed(CA::Transaction*) + 849 7 QuartzCore 0x00007ff80d8d3f14 CA::Context::commit_transaction(CA::Transaction*, double, double*) + 766 8 QuartzCore 0x00007ff80d711a6f CA::Transaction::commit() + 725 9 AppKit 0x00007ff807dc5831 __62+[CATransaction(NSCATransaction) NS_setFlushesWithDisplayLink]_block_invoke + 289 10 AppKit 0x00007ff8088db7b2 ___NSRunLoopObserverCreateWithHandler_block_invoke + 41 11 CoreFoundation 0x00007ff8043a6930 __CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ + 23 12 CoreFoundation 0x00007ff8043a684c __CFRunLoopDoObservers + 503 13 CoreFoundation 0x00007ff8043a5de5 __CFRunLoopRun + 905 14 CoreFoundation 0x00007ff8043a542c CFRunLoopRunSpecific + 550 15 HIToolbox 0x00007ff80ffa3413 RunCurrentEventLoopInMode + 292 16 HIToolbox 0x00007ff80ffa8c2e ReceiveNextEventCommon + 192 17 HIToolbox 0x00007ff80ffa9029 _BlockUntilNextEventMatchingListInModeWithFilter + 66 18 AppKit 0x00007ff807c71b33 _DPSNextEvent + 902 19 AppKit 0x00007ff8086c68b8 -[NSApplication(NSEventRouting) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1290 20 AppKit 0x00007ff807c62aa9 -[NSApplication run] + 610 21 game_library.dylib 0x0000000122a8fe95 cocoa_glue_start + 873 22 game_library.dylib 0x00000001226d1f69 interactive::application::interactive_main(utility::vector1, std::__1::allocator>, std::__1::allocator, std::__1::allocator>>> const&, boost::function, boost::function, bool) + 6640 23 game_library.dylib 0x0000000122e119a1 game::application::game_main(int, char**, char const*, game::application::ExecutableKindEnum) + 3666 24 Foldit 0x000000010092c24b run_library_main(std::__1::basic_string, std::__1::allocator> const&, bool, std::__1::basic_string, std::__1::allocator> const&, int&, int, char**, std::__1::basic_string, std::__1::allocator>&) + 409 25 Foldit 0x000000010092bac3 main + 481 26 dyld 0x0000000200bb42cd start + 1805