jeff101 Lv 1
I don't think it would be confusing, especially if the player knowingly chose not to show the copies. Having the copies hidden would let players examine the contact region more closely without the copied monomers blocking the view.
Perhaps having an option like show copied monomers as transparent would help. The copied monomers could display as white/grey/black outlines or a pulsed view so they would be partially visible but not obscure the view of the main monomer.
From your posts above, it sounds like it would be easier to change the display of the copied monomers than to actually turn off the calculation of their behavior.