I can't run 670 for some reason. I begin a script and it crashes after a short while. I am using main and I have had this problem with the both of the updates. It could be happening when the dips into very negative scores, but this is just speculation. Thanks.
I reinstalled foldit. Many of the buggy issues I was having went away. Then I opened 670 and the blue question mark by my score came back and things got buggy again. I think that there is an entanglement between the tutorials and model 670 for some reason. Hope this information helps.
Thanks for the report, karstenw. We're working on getting this sorted.
I started playing 670 yesterday.
I am using a PC running Win7 and using Foldit build 2013=01=04=53043-win_x86-devprev
This setup was running fine when I was working on 669
but on 670 I am getting intermittant crashes when doing simple things like Wiggle.
Last thing in the log is many many entries of:
Drawing surface of 80 atoms on 80 billboards
preceeded by quite a lot of :
Autosaved puzzles/0000994302/0000071954/S1/autosave.ir_solution.
and SRVR_THRD getting notifications…
Lastest error messages :
SRVR_THRD error: Transferred a partial file: Error contacting server. (......\rosetta_source\src\game\application\novice\boinc\Boinc.cc:87)
SRVR_THRD error: Error parsing https://fold.it/comm_cache/puzzle_user3_csv/994302_diff.txt:
Line has too few values. (......\rosetta_source\src\game\application\novice\boinc\boinc_util.cc:59)
SRVR_THRD error: Error parsing https://fold.it/comm_cache/puzzle_user3_csv/994302_diff.txt:
Line has too few values. (......\rosetta_source\src\game\application\novice\boinc\boinc_util.cc:59)
Don't know if that helps at all.
crash example
OS:
Windows 7 for x64-based Systems
Menu, General Options, Build ID:
2013-01-15-53170-win_x86-devprev
Score for track (670t3) after restart:
-167525.101
I saved this pose and shared to AD group
In the pic attached note two points
The Tryptophan at #3 has a ring around a shadow and very low score
The Cystein at #29 is near its own shadow and the log file mentions finding a di-sulfide between #59 and #89 (two shadows?) as one of last things before crash
end of log file following crash:
Playing sound: 4
Tool on_action_complete called
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 82 rotamers at 5 positions.
core.pack.pack_rotamers: IG: 13984 bytes
SRVR_THRD getting notifications…
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 54 rotamers at 5 positions.
core.pack.pack_rotamers: IG: 7712 bytes
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 44 rotamers at 6 positions.
core.pack.pack_rotamers: IG: 7004 bytes
delta_score: 0
Playing sound: 4
Tool on_action_complete called
core.conformation.symmetry.SymmData: symmetry name: d2
core.conformation.symmetry.SymmData: number of subunits: 4
core.conformation.symmetry.SymmData: number of interfaces: 3
core.conformation.symmetry.SymmData: score subunit number: VRT0001
core.conformation.symmetry.SymmData: anchor the subunits at residue: 31
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0001
core.conformation.symmetry.SymmData: x: -1 0 0
core.conformation.symmetry.SymmData: y: 0 1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0002
core.conformation.symmetry.SymmData: x: 1 -1.22465e-016 0
core.conformation.symmetry.SymmData: y: -1.22465e-016 -1 0
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0003
core.conformation.symmetry.SymmData: x: 1 1.22465e-016 -1.49976e-032
core.conformation.symmetry.SymmData: y: -1.22465e-016 1 -1.22465e-016
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Virtual coordinate system VRT0004
core.conformation.symmetry.SymmData: x: -1 0 -1.49976e-032
core.conformation.symmetry.SymmData: y: 0 -1 -1.22465e-016
core.conformation.symmetry.SymmData: origin: 0 0 0
core.conformation.symmetry.SymmData: Dof for jump: 1
core.conformation.symmetry.SymmData: x 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,360:0,0 n2c
core.conformation.symmetry.SymmData: Dof for jump: 6
core.conformation.symmetry.SymmData: x 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: y 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z 1:50,50:0,0 n2c
core.conformation.symmetry.SymmData: x_angle 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: y_angle 0:0,0:0,0 n2c
core.conformation.symmetry.SymmData: z_angle 1:0,90:0,0 n2c
core.conformation.symmetry.SymmData: Jump BASEJUMP VRT0001 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0002 VRT0002 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0003 VRT0003 SUBUNIT
core.conformation.symmetry.SymmData: Jump CLONE0004 VRT0004 SUBUNIT
core.conformation.symmetry.SymmData: Jump JUMP1 VRT0001 VRT0002
core.conformation.symmetry.SymmData: Jump JUMP2 VRT0002 VRT0003
core.conformation.symmetry.SymmData: Jump JUMP3 VRT0003 VRT0004
core.conformation.symmetry.SymmData: Include subunit: 1 2 3 4
core.conformation.symmetry.SymmData: Output subunit: 1 2 3 4
core.conformation.symmetry.SymmData: SlideType: RANDOM
core.conformation.symmetry.SymmData: SlideCriteriaType: CEN_DOCK_SCORE
core.conformation.symmetry.SymmData: SlideCriteriaVal: AUTOMATIC
core.conformation.symmetry.SymmData: SlideOrder: none
core.conformation.symmetry.Conformation: Found disulfide between residues 29 122
core.conformation.symmetry.Conformation: current variant for 29 CYS
core.conformation.symmetry.Conformation: current variant for 122 CYS
core.conformation.symmetry.Conformation: current variant for 29 CYD
core.conformation.symmetry.Conformation: current variant for 122 CYD
basic.io.database: Database file opened: scoring/score_functions/disulfides/fa_SS_distance_score
core.conformation.Conformation: Found disulfide between residues 29 119
core.conformation.Conformation: current variant for 29 CYS
core.conformation.Conformation: current variant for 119 CYS
core.conformation.Conformation: current variant for 29 CYD
core.conformation.Conformation: current variant for 119 CYD
core.conformation.Conformation: Found disulfide between residues 59 89
core.conformation.Conformation: current variant for 59 CYS
core.conformation.Conformation: current variant for 89 CYS
core.conformation.Conformation: current variant for 59 CYD
core.conformation.Conformation: current variant for 89 CYD
UNHANDLED EXCEPTION
1: library_main +19641742 bytes (no line)
2: library_main +4472467 bytes (no line)
3: library_main +1261013 bytes (no line)
4: library_main +3815325 bytes (no line)
5: library_main +4727586 bytes (no line)
6: library_main +4692605 bytes (no line)
7: library_main +4696335 bytes (no line)
8: library_main +17290762 bytes (no line)
9: library_main +17292464 bytes (no line)
10: library_main +18030510 bytes (no line)
11: library_main +18040757 bytes (no line)
12: library_main +17322087 bytes (no line)
13: library_main +17290005 bytes (no line)
14: library_main +4733591 bytes (no line)
15: library_main +4254990 bytes (no line)
16: library_main +4258134 bytes (no line)
17: BaseThreadInitThunk +18 bytes (no line)
18: RtlInitializeExceptionChain +99 bytes (no line)
19: RtlInitializeExceptionChain +54 bytes (no line)
suspect disulfide to shadow is problem
further above, I went into selection mode, banded #29 Cys to it's Cys shadow and got an immediate crash on wiggle (normal CI)
The controversial "is it laggy or just a resource hog?", question depends on the bugs you are experiencing. I was running a bit slow days ago, but that could just be the nature of symmetry puzzles. Today i'm experiencing serious lag. The puzzle is barely functioning at all. I'm just trying to provide more info because i think this bug is intermittent and depends on certain client conditions. Have fun chasing this one down. :)
simple shadow disulfide crash demo
From reset moved model up a bit, mutated seg #15 to Cystein, with move tool moved #15 towards the Cys in the shadow, achieved immediate crash with score about +7756, log file end as before (except different ##s for the Cys's):
Autosaved puzzles/0000994302/0000235191/670t4/autosave.ir_solution.
Autosaved puzzles/0000994302/0000235191/670t4/autosave-best.ir_solution.
Autosaved puzzles/0000994302/0000235191/670t4/autosave-recentbest.ir_solution.
Autosaved puzzles/0000994302/0000235191/670t4/autosave-creditbest.ir_solution.
core.conformation.symmetry.Conformation: Found disulfide between residues 15 46
core.conformation.symmetry.Conformation: current variant for 15 CYS
core.conformation.symmetry.Conformation: current variant for 46 CYS
core.conformation.symmetry.Conformation: current variant for 15 CYD
core.conformation.symmetry.Conformation: current variant for 46 CYD
basic.io.database: Database file opened: scoring/score_functions/disulfides/fa_SS_distance_score
Error: No residues found. Skipping ResidueIE bonus filter calculation.
core.conformation.Conformation: Found disulfide between residues 15 45
core.conformation.Conformation: current variant for 15 CYS
core.conformation.Conformation: current variant for 45 CYS
core.conformation.Conformation: current variant for 15 CYD
core.conformation.Conformation: current variant for 45 CYD
core.conformation.Conformation: Found disulfide between residues 75 105
core.conformation.Conformation: current variant for 75 CYS
core.conformation.Conformation: current variant for 105 CYS
core.conformation.Conformation: current variant for 75 CYD
core.conformation.Conformation: current variant for 105 CYD
UNHANDLED EXCEPTION
1: library_main +19641742 bytes (no line)
2: library_main +4472467 bytes (no line)
3: library_main +1261013 bytes (no line)
4: library_main +3815325 bytes (no line)
5: library_main +4059686 bytes (no line)
6: library_main +916604 bytes (no line)
7: library_main +5909809 bytes (no line)
8: library_main +5871077 bytes (no line)
9: library_main +5882253 bytes (no line)
10: library_main +3784201 bytes (no line)
11: library_main +3580590 bytes (no line)
12: library_main +3478620 bytes (no line)
13: library_main +5634313 bytes (no line)
14: library_main +3477865 bytes (no line)
15: library_main +5640868 bytes (no line)
16: library_main +5643175 bytes (no line)
17: gapfnScSendMessage +818 bytes (no line)
18: GetThreadDesktop +215 bytes (no line)
19: GetClientRect +197 bytes (no line)
20: CallWindowProcW +27 bytes (no line)
21: wglSwapBuffers +730 bytes (no line)
22: gapfnScSendMessage +818 bytes (no line)
23: GetThreadDesktop +215 bytes (no line)
24: CharPrevW +312 bytes (no line)
25: DispatchMessageA +15 bytes (no line)
26: library_main +5648579 bytes (no line)
27: library_main +3471085 bytes (no line)
28: library_main +24023 bytes (no line)
29: library_main +43 bytes (no line)
30: no symbol (no line)
31: no symbol (no line)
32: no symbol (no line)
33: BaseThreadInitThunk +18 bytes (no line)
34: RtlInitializeExceptionChain +99 bytes (no line)
35: RtlInitializeExceptionChain +54 bytes (no line)
crash without shadow-to-model interaction
This time I started fresh, moved the model well away from shadows, made two sheets of all C's and brought them together, resulting in crash with following log end:
Error: No residues found. Skipping ResidueIE bonus filter calculation.
Error: No residues found. Skipping ResidueIE bonus filter calculation.
Error: No residues found. Skipping ResidueIE bonus filter calculation.
Error: No residues found. Skipping ResidueIE bonus filter calculation.
Error: No residues found. Skipping ResidueIE bonus filter calculation.
Error: No residues found. Skipping ResidueIE bonus filter calculation.
Error: No residues found. Skipping ResidueIE bonus filter calculation.
Error: No residues found. Skipping ResidueIE bonus filter calculation.
Error: No residues found. Skipping ResidueIE bonus filter calculation.
core.conformation.symmetry.Conformation: Found disulfide between residues 3 25
core.conformation.symmetry.Conformation: current variant for 3 CYS
core.conformation.symmetry.Conformation: current variant for 25 CYS
core.conformation.symmetry.Conformation: current variant for 3 CYD
core.conformation.symmetry.Conformation: current variant for 25 CYD
core.conformation.symmetry.Conformation: Found disulfide between residues 5 23
core.conformation.symmetry.Conformation: current variant for 5 CYS
core.conformation.symmetry.Conformation: current variant for 23 CYS
core.conformation.symmetry.Conformation: current variant for 5 CYD
core.conformation.symmetry.Conformation: current variant for 23 CYD
core.conformation.symmetry.Conformation: Found disulfide between residues 7 21
core.conformation.symmetry.Conformation: current variant for 7 CYS
core.conformation.symmetry.Conformation: current variant for 21 CYS
core.conformation.symmetry.Conformation: current variant for 7 CYD
core.conformation.symmetry.Conformation: current variant for 21 CYD
basic.io.database: Database file opened: scoring/score_functions/disulfides/fa_SS_distance_score
Error: No residues found. Skipping ResidueIE bonus filter calculation.
core.conformation.Conformation: Found disulfide between residues 3 25
core.conformation.Conformation: current variant for 3 CYS
core.conformation.Conformation: current variant for 25 CYS
core.conformation.Conformation: current variant for 3 CYD
core.conformation.Conformation: current variant for 25 CYD
core.conformation.Conformation: Found disulfide between residues 5 23
core.conformation.Conformation: current variant for 5 CYS
core.conformation.Conformation: current variant for 23 CYS
core.conformation.Conformation: current variant for 5 CYD
core.conformation.Conformation: current variant for 23 CYD
core.conformation.Conformation: Found disulfide between residues 7 21
core.conformation.Conformation: current variant for 7 CYS
core.conformation.Conformation: current variant for 21 CYS
core.conformation.Conformation: current variant for 7 CYD
core.conformation.Conformation: current variant for 21 CYD
core.conformation.Conformation: Found disulfide between residues 33 55
core.conformation.Conformation: current variant for 33 CYS
core.conformation.Conformation: current variant for 55 CYS
core.conformation.Conformation: current variant for 33 CYD
core.conformation.Conformation: current variant for 55 CYD
core.conformation.Conformation: Found disulfide between residues 35 53
core.conformation.Conformation: current variant for 35 CYS
core.conformation.Conformation: current variant for 53 CYS
core.conformation.Conformation: current variant for 35 CYD
core.conformation.Conformation: current variant for 53 CYD
core.conformation.Conformation: Found disulfide between residues 37 51
core.conformation.Conformation: current variant for 37 CYS
core.conformation.Conformation: current variant for 51 CYS
core.conformation.Conformation: current variant for 37 CYD
core.conformation.Conformation: current variant for 51 CYD
core.conformation.Conformation: Found disulfide between residues 63 85
core.conformation.Conformation: current variant for 63 CYS
core.conformation.Conformation: current variant for 85 CYS
core.conformation.Conformation: current variant for 63 CYD
core.conformation.Conformation: current variant for 85 CYD
core.conformation.Conformation: Found disulfide between residues 65 83
core.conformation.Conformation: current variant for 65 CYS
core.conformation.Conformation: current variant for 83 CYS
core.conformation.Conformation: current variant for 65 CYD
core.conformation.Conformation: current variant for 83 CYD
core.conformation.Conformation: Found disulfide between residues 67 81
core.conformation.Conformation: current variant for 67 CYS
core.conformation.Conformation: current variant for 81 CYS
core.conformation.Conformation: current variant for 67 CYD
core.conformation.Conformation: current variant for 81 CYD
core.conformation.Conformation: Found disulfide between residues 93 115
core.conformation.Conformation: current variant for 93 CYS
core.conformation.Conformation: current variant for 115 CYS
core.conformation.Conformation: current variant for 93 CYD
core.conformation.Conformation: current variant for 115 CYD
core.conformation.Conformation: Found disulfide between residues 95 113
core.conformation.Conformation: current variant for 95 CYS
core.conformation.Conformation: current variant for 113 CYS
core.conformation.Conformation: current variant for 95 CYD
core.conformation.Conformation: current variant for 113 CYD
core.conformation.Conformation: Found disulfide between residues 97 111
core.conformation.Conformation: current variant for 97 CYS
core.conformation.Conformation: current variant for 111 CYS
core.conformation.Conformation: current variant for 97 CYD
core.conformation.Conformation: current variant for 111 CYD
UNHANDLED EXCEPTION
1: library_main +19641742 bytes (no line)
2: library_main +4472467 bytes (no line)
3: library_main +1261013 bytes (no line)
4: library_main +3815325 bytes (no line)
5: library_main +4727586 bytes (no line)
6: library_main +4692605 bytes (no line)
7: library_main +4696335 bytes (no line)
8: library_main +17290762 bytes (no line)
9: library_main +17292464 bytes (no line)
10: library_main +18030510 bytes (no line)
11: library_main +18040757 bytes (no line)
12: library_main +17322087 bytes (no line)
13: library_main +17290005 bytes (no line)
14: library_main +4733591 bytes (no line)
15: library_main +4254990 bytes (no line)
16: library_main +4258134 bytes (no line)
17: BaseThreadInitThunk +18 bytes (no line)
18: RtlInitializeExceptionChain +99 bytes (no line)
19: RtlInitializeExceptionChain +54 bytes (no line)
We've made a number of fixes related to crashes with disulfides, particularly in symmetry puzzles. They will go out in an update soon.