Placeholder image of a protein
Icon representing a puzzle

1120: Unsolved De-novo Freestyle 54

Closed since over 10 years ago

Intermediate Overall Prediction

Summary

Created
July 30, 2015
Expires
Max points
100
Description

The structure of this protein is still unsolved. The PSIPRED secondary structure predictions are provided on the starting model.



Sequence:

MQTLTVADFALRLAVGVGCGAIIGLERQWRARMAGLRTNALVATGATLFVLYAVATEDSSPTRVASYVVSGIGFLGGGVILREGFNVRGLNTAATLWCSAAVGVLAASGHLVFTLIGTGTIVAVHLLGRPLGRLVDRDNA

Top groups

  1. Avatar for Natural Abilities 11. Natural Abilities 4 pts. 8,412
  2. Avatar for FoldIt@Netherlands 12. FoldIt@Netherlands 3 pts. 8,327
  3. Avatar for BOINC@Poland 13. BOINC@Poland 2 pts. 8,289
  4. Avatar for Deleted group 14. Deleted group pts. 8,240
  5. Avatar for Italiani Al Lavoro 15. Italiani Al Lavoro 1 pt. 8,043
  6. Avatar for freefolder 16. freefolder 1 pt. 7,815
  7. Avatar for Eὕρηκα! Heureka! 17. Eὕρηκα! Heureka! 1 pt. 7,810
  8. Avatar for foldeRNA 18. foldeRNA 1 pt. 7,116
  9. Avatar for Jorks! 19. Jorks! 1 pt. 6,652
  10. Avatar for DSN @ Home 20. DSN @ Home 1 pt. 6,067
  1. Avatar for cbwest 61. cbwest Lv 1 27 pts. 8,553
  2. Avatar for fryguy 62. fryguy Lv 1 26 pts. 8,507
  3. Avatar for christioanchauvin 63. christioanchauvin Lv 1 25 pts. 8,487
  4. Avatar for silverberg 64. silverberg Lv 1 25 pts. 8,474
  5. Avatar for weitzen 65. weitzen Lv 1 24 pts. 8,422
  6. Avatar for Mr_Jolty 66. Mr_Jolty Lv 1 23 pts. 8,412
  7. Avatar for manu8170 67. manu8170 Lv 1 23 pts. 8,402
  8. Avatar for SKSbell 68. SKSbell Lv 1 22 pts. 8,389
  9. Avatar for tallguy-13088 69. tallguy-13088 Lv 1 22 pts. 8,388
  10. Avatar for alwen 70. alwen Lv 1 21 pts. 8,383

Comments

brgreening Lv 1

the display of the
Simplified version of the Jpred4 SS prediction
above was as a JPG file. Could you display it
as plain text? That way, a player could copy the
text string an put it in a "set the amino acids"
program?

Madde Lv 1

1———11——–21——–31——–41——–51——–61——–71——–81——–91——–101——-111——-121——-131——- MQTLTVADFALRLAVGVGCGAIIGLERQWRARMAGLRTNALVATGATLFVLYAVATEDSSPTRVASYVVSGIGFLGGGVILREGFNVRGLNTAATLWCSAAVGVLAASGHLVFTLIGTGTIVAVHLLGRPLGRLVDRDNA CCCCcHHHHHHHHHHHHHHHHHHhhcchhccCCCccHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHhhhcceeecCcceechhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHHHccCCC 99972799999999999999999200111047776378999999999999999812688876278999999987330212231763210130358999999999874201589999999999999885899998715999

bkoep Staff Lv 1

These secondary structure predictions are probably more accurate than those provided on the starting solution. It seems there was a problem with our original PSIPRED predictions for this sequence.

Thanks Madde!

Bautho Lv 1

Maybe too late, but the OCTOPUS server predicted this protein to be a membrane protein…
You should maybe add this into the description.

Sequence name: query_sequence
Sequence length: 140 aa.
Sequence:
MQTLTVADFALRLAVGVGCGAIIGLERQWRARMAGLRTNALVATGATLFVLYAVATEDSS
PTRVASYVVSGIGFLGGGVILREGFNVRGLNTAATLWCSAAVGVLAASGHLVFTLIGTGT
IVAVHLLGRPLGRLVDRDNA

SPOCTOPUS predicted topology:
ooooMMMMMMMMMMMMMMMMMMMMMiiiiiiiiMMMMMMMMMMMMMMMMMMMMMoooooo
ooMMMMMMMMMMMMMMMMMMMMMiiiiiiiiiiiMMMMMMMMMMMMMMMoMMMMMMMMMM
MMMMMiiiiiiiiiiiiiii