1120: Unsolved De-novo Freestyle 54

Closed since over 10 years ago

Summary

• Created: July 30, 2015
• Expires: August 06, 2015 at 23:00 UTC
• Max points: 100

Description

The structure of this protein is still unsolved. The PSIPRED secondary structure predictions are provided on the starting model.



Sequence:

MQTLTVADFALRLAVGVGCGAIIGLERQWRARMAGLRTNALVATGATLFVLYAVATEDSSPTRVASYVVSGIGFLGGGVILREGFNVRGLNTAATLWCSAAVGVLAASGHLVFTLIGTGTIVAVHLLGRPLGRLVDRDNA

Top groups

• 21. Geekdo 1 pt. 752
• 22. CureCoin 1 pt. 666

Top soloists

• 171. Brian the Prion 1 pt. 6,509
• 172. Duke_K 1 pt. 6,474
• 173. martinf 1 pt. 6,419
• 174. Tyggy Too 1 pt. 6,155
• 175. franse 1 pt. 6,144
• 176. aspadistra 1 pt. 6,067
• 177. James.Ringler 1 pt. 6,046
• 178. atimeswift 1 pt. 6,014
• 179. DScott 1 pt. 5,931
• 180. smholst 1 pt. 5,919

Comments

[Madde]

For the next two days you can see the secondary structure prediction of the Jpred 4 server at
http://www.compbio.dundee.ac.uk/jpred4/results/jp_cdjyugd/jp_cdjyugd.results.html

[Madde]

See http://fold.it/portal/node/2001002 for a colorized version of the picture above

[retiredmichaelirc]

thank you for sharing this

[Madde]

http://bioinf.cs.ucl.ac.uk/psipred/result/caf171d2-3a1f-11e5-84d8-00163e110593

Looks pretty much like the Jpred one.

[brgreening]

the display of the
Simplified version of the Jpred4 SS prediction
above was as a JPG file. Could you display it
as plain text? That way, a player could copy the
text string an put it in a "set the amino acids"
program?

[Madde]

1———11——–21——–31——–41——–51——–61——–71——–81——–91——–101——-111——-121——-131——- MQTLTVADFALRLAVGVGCGAIIGLERQWRARMAGLRTNALVATGATLFVLYAVATEDSSPTRVASYVVSGIGFLGGGVILREGFNVRGLNTAATLWCSAAVGVLAASGHLVFTLIGTGTIVAVHLLGRPLGRLVDRDNA CCCCcHHHHHHHHHHHHHHHHHHhhcchhccCCCccHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHhhhcceeecCcceechhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHHHccCCC 99972799999999999999999200111047776378999999999999999812688876278999999987330212231763210130358999999999874201589999999999999885899998715999

[bkoep]

These secondary structure predictions are probably more accurate than those provided on the starting solution. It seems there was a problem with our original PSIPRED predictions for this sequence.

Thanks Madde!

[brgreening]

Danke

[brgreening]

Danke

[Bautho]

Maybe too late, but the OCTOPUS server predicted this protein to be a membrane protein…
You should maybe add this into the description.

Sequence name: query_sequence
Sequence length: 140 aa.
Sequence:
MQTLTVADFALRLAVGVGCGAIIGLERQWRARMAGLRTNALVATGATLFVLYAVATEDSS
PTRVASYVVSGIGFLGGGVILREGFNVRGLNTAATLWCSAAVGVLAASGHLVFTLIGTGT
IVAVHLLGRPLGRLVDRDNA

SPOCTOPUS predicted topology:
ooooMMMMMMMMMMMMMMMMMMMMMiiiiiiiiMMMMMMMMMMMMMMMMMMMMMoooooo
ooMMMMMMMMMMMMMMMMMMMMMiiiiiiiiiiiMMMMMMMMMMMMMMMoMMMMMMMMMM
MMMMMiiiiiiiiiiiiiii