Placeholder image of a protein
Icon representing a puzzle

1120: Unsolved De-novo Freestyle 54

Closed since over 10 years ago

Intermediate Overall Prediction

Summary

Created
July 30, 2015
Expires
Max points
100
Description

The structure of this protein is still unsolved. The PSIPRED secondary structure predictions are provided on the starting model.



Sequence:

MQTLTVADFALRLAVGVGCGAIIGLERQWRARMAGLRTNALVATGATLFVLYAVATEDSSPTRVASYVVSGIGFLGGGVILREGFNVRGLNTAATLWCSAAVGVLAASGHLVFTLIGTGTIVAVHLLGRPLGRLVDRDNA

Top groups

  1. Avatar for Void Crushers
    1. Void Crushers
    100 pts. 9,545
  2. Avatar for Anthropic Dreams 2. Anthropic Dreams 79 pts. 9,392
  3. Avatar for Go Science 3. Go Science 61 pts. 9,376
  4. Avatar for Contenders 4. Contenders 47 pts. 9,321
  5. Avatar for Beta Folders 5. Beta Folders 35 pts. 9,296
  6. Avatar for Gargleblasters 6. Gargleblasters 26 pts. 9,248
  7. Avatar for HMT heritage 7. HMT heritage 19 pts. 9,208
  8. Avatar for L'Alliance Francophone 8. L'Alliance Francophone 14 pts. 9,047
  9. Avatar for Deleted group 9. Deleted group pts. 8,834
  10. Avatar for xkcd 10. xkcd 7 pts. 8,507
  1. Avatar for Madde
    1. Madde Lv 1
    100 pts. 9,545
  2. Avatar for Mike Cassidy 2. Mike Cassidy Lv 1 90 pts. 9,500
  3. Avatar for Galaxie 3. Galaxie Lv 1 80 pts. 9,392
  4. Avatar for gmn 4. gmn Lv 1 71 pts. 9,382
  5. Avatar for alwen 5. alwen Lv 1 63 pts. 9,378
  6. Avatar for jermainiac 6. jermainiac Lv 1 55 pts. 9,378
  7. Avatar for Bruno Kestemont 7. Bruno Kestemont Lv 1 49 pts. 9,376
  8. Avatar for gloverd 8. gloverd Lv 1 43 pts. 9,373
  9. Avatar for jamiexq 9. jamiexq Lv 1 37 pts. 9,368
  10. Avatar for pauldunn 10. pauldunn Lv 1 32 pts. 9,367

Comments

brgreening Lv 1

the display of the
Simplified version of the Jpred4 SS prediction
above was as a JPG file. Could you display it
as plain text? That way, a player could copy the
text string an put it in a "set the amino acids"
program?

Madde Lv 1

1———11——–21——–31——–41——–51——–61——–71——–81——–91——–101——-111——-121——-131——- MQTLTVADFALRLAVGVGCGAIIGLERQWRARMAGLRTNALVATGATLFVLYAVATEDSSPTRVASYVVSGIGFLGGGVILREGFNVRGLNTAATLWCSAAVGVLAASGHLVFTLIGTGTIVAVHLLGRPLGRLVDRDNA CCCCcHHHHHHHHHHHHHHHHHHhhcchhccCCCccHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHhhhcceeecCcceechhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHHHccCCC 99972799999999999999999200111047776378999999999999999812688876278999999987330212231763210130358999999999874201589999999999999885899998715999

bkoep Staff Lv 1

These secondary structure predictions are probably more accurate than those provided on the starting solution. It seems there was a problem with our original PSIPRED predictions for this sequence.

Thanks Madde!

Bautho Lv 1

Maybe too late, but the OCTOPUS server predicted this protein to be a membrane protein…
You should maybe add this into the description.

Sequence name: query_sequence
Sequence length: 140 aa.
Sequence:
MQTLTVADFALRLAVGVGCGAIIGLERQWRARMAGLRTNALVATGATLFVLYAVATEDSS
PTRVASYVVSGIGFLGGGVILREGFNVRGLNTAATLWCSAAVGVLAASGHLVFTLIGTGT
IVAVHLLGRPLGRLVDRDNA

SPOCTOPUS predicted topology:
ooooMMMMMMMMMMMMMMMMMMMMMiiiiiiiiMMMMMMMMMMMMMMMMMMMMMoooooo
ooMMMMMMMMMMMMMMMMMMMMMiiiiiiiiiiiMMMMMMMMMMMMMMMoMMMMMMMMMM
MMMMMiiiiiiiiiiiiiii