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2296: Electron Density Reconstruction 38 (please try Trim tool)

Closed since almost 3 years ago

Novice Overall Prediction Electron Density

Summary

Created
April 28, 2023
Expires
Max points
100
Description

The structure of this protein has already been solved and published, but close inspection suggests that there are some problems with the published solution. We'd like to see if Foldit players can use the same electron density data to reconstruct a better model. This one has four copies of the protein in it. It's not as gigantic as 2291, but still big enough that the Trim tool will probably be necessary.

Sequence
RPKLSTKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNINQMIGTMKRYQQEILSIDAIKRSSEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGKKDSEAVFKKTYPNQIIFDDVRTNKLQTALNNLKVGYELLDSQK

Top groups

  1. Avatar for Team China 11. Team China 1 pt. 77,272
  2. Avatar for Trinity Biology 12. Trinity Biology 1 pt. 30,566
  1. Avatar for LociOiling
    1. LociOiling Lv 1
    100 pts. 82,387
  2. Avatar for grogar7 2. grogar7 Lv 1 94 pts. 82,301
  3. Avatar for MicElephant 3. MicElephant Lv 1 88 pts. 82,208
  4. Avatar for toshiue 4. toshiue Lv 1 83 pts. 82,199
  5. Avatar for Sandrix72 5. Sandrix72 Lv 1 77 pts. 82,186
  6. Avatar for christioanchauvin 6. christioanchauvin Lv 1 72 pts. 82,165
  7. Avatar for NinjaGreg 7. NinjaGreg Lv 1 68 pts. 82,159
  8. Avatar for Bletchley Park 8. Bletchley Park Lv 1 63 pts. 82,150
  9. Avatar for drjr 9. drjr Lv 1 59 pts. 82,148
  10. Avatar for Galaxie 10. Galaxie Lv 1 55 pts. 82,146

Comments

LociOiling Lv 1

This one is a teeny 585 segments, with four chains. Chains A, B, and D are identical, with a length of 146 segments each. Chain C starts out the same, but then adds an extra aspartate (D) at the end, for a length of 147 segements.

The chain view looks like this:

A: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyell
B: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyell
C: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyelld
D: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyell

(We have nothing to fear but feare itself.)

Sandrix72 Lv 1

Wishlist about trim:
1) To have lua command for trim and untrim
2) Possibility to merge two or more trimmed solutions if there is no overlap between them