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2296: Electron Density Reconstruction 38 (please try Trim tool)

Closed since almost 3 years ago

Novice Overall Prediction Electron Density

Summary

Created
April 28, 2023
Expires
Max points
100
Description

The structure of this protein has already been solved and published, but close inspection suggests that there are some problems with the published solution. We'd like to see if Foldit players can use the same electron density data to reconstruct a better model. This one has four copies of the protein in it. It's not as gigantic as 2291, but still big enough that the Trim tool will probably be necessary.

Sequence
RPKLSTKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNINQMIGTMKRYQQEILSIDAIKRSSEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGKKDSEAVFKKTYPNQIIFDDVRTNKLQTALNNLKVGYELLDSQK

Top groups

  1. Avatar for Anthropic Dreams
    1. Anthropic Dreams
    100 pts. 82,456
  2. Avatar for Go Science 2. Go Science 63 pts. 82,297
  3. Avatar for Contenders 3. Contenders 37 pts. 82,208
  4. Avatar for L'Alliance Francophone 4. L'Alliance Francophone 21 pts. 82,165
  5. Avatar for Marvin's bunch 5. Marvin's bunch 11 pts. 81,867
  6. Avatar for FamilyBarmettler 6. FamilyBarmettler 5 pts. 81,654
  7. Avatar for Italiani Al Lavoro 7. Italiani Al Lavoro 2 pts. 80,888
  8. Avatar for VeFold 8. VeFold 1 pt. 80,835
  9. Avatar for BOINC@Poland 9. BOINC@Poland 1 pt. 80,507
  10. Avatar for Australia 10. Australia 1 pt. 80,422
  1. Avatar for Galaxie
    1. Galaxie Lv 1
    100 pts. 82,456
  2. Avatar for LociOiling 2. LociOiling Lv 1 52 pts. 82,388
  3. Avatar for gmn 3. gmn Lv 1 24 pts. 82,366
  4. Avatar for phi16 4. phi16 Lv 1 10 pts. 82,322
  5. Avatar for toshiue 5. toshiue Lv 1 4 pts. 82,297
  6. Avatar for Bruno Kestemont 6. Bruno Kestemont Lv 1 1 pt. 82,245
  7. Avatar for silent gene 7. silent gene Lv 1 1 pt. 82,223
  8. Avatar for alcor29 8. alcor29 Lv 1 1 pt. 82,223
  9. Avatar for Oransche 9. Oransche Lv 1 1 pt. 81,378

Comments

LociOiling Lv 1

This one is a teeny 585 segments, with four chains. Chains A, B, and D are identical, with a length of 146 segments each. Chain C starts out the same, but then adds an extra aspartate (D) at the end, for a length of 147 segements.

The chain view looks like this:

A: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyell
B: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyell
C: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyelld
D: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyell

(We have nothing to fear but feare itself.)

Sandrix72 Lv 1

Wishlist about trim:
1) To have lua command for trim and untrim
2) Possibility to merge two or more trimmed solutions if there is no overlap between them