206: Mini-CASP 6-Freestyle

Closed since over 16 years ago

Summary

• Created: October 07, 2009
• Expires: October 13, 2009 at 23:00 UTC
• Max points: 100

Description

Here is the next Mini-CASP target whose solved structure will be released soon. Again we are giving you an extended chain to see what you come up with. This might be very difficult, since this blind prediction has 121 residues, so we will give you Rosetta@home predictions for this target next week. Until then, good luck freestyle folding! We will post the secondary structure predictions for this puzzle in the puzzle comments.

Top groups

• 1. Void Crushers 100 pts. 10,632
• 2. Richard Dawkins Foundation 84 pts. 10,534
• 3. Russian team 70 pts. 10,284
• 4. Contenders 57 pts. 10,278
• 5. ExPitneyFolders 47 pts. 10,251
• 6. Deleted group pts. 10,143
• 7. Deleted group pts. 10,093
• 8. SETI.Germany 24 pts. 10,092
• 9. turkish voluntered 19 pts. 10,037
• 10. Deleted group pts. 10,022

Top soloists

• 31. mat747 41 pts. 9,796
• 32. Steven Pletsch 40 pts. 9,774
• 33. Deus_Tempestas 39 pts. 9,754
• 34. gcm24 37 pts. 9,750
• 35. StewedLionII 36 pts. 9,750
• 36. dejerpha 35 pts. 9,750
• 37. Wooz 34 pts. 9,685
• 38. jobo0502 33 pts. 9,678
• 39. Deleted player pts. 9,674
• 40. TheGUmmer 31 pts. 9,632

Comments

[beta_helix]

As soon as I get the sequence logo secondary structure predictions back from the SAM server
(http://compbio.soe.ucsc.edu/SAM_T08/faq.html)
I will post them here!

[beta_helix]

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Valine at residue 101 is highly predicted to be part of a sheet. However, the Alanine at residue 61 is predicted to have an equal probability of being anything.