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212: Mini-CASP 8-Freestyle

Closed since over 16 years ago

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Summary

Created
October 21, 2009
Expires
Max points
100
Description

Here is the next Mini-CASP target whose solved structure will be released soon. Again we are giving you an extended chain to see what you come up with. This might be difficult since this chain has 149 residues, so we will release Rosetta predictions for this target next week. Until then, good luck freestyle folding! The secondary structure prediction will be posted in the puzzle comments.

Top groups

  1. Avatar for ExPitneyFolders 11. ExPitneyFolders 6 pts. 10,112
  2. Avatar for Deleted group 12. Deleted group pts. 10,082
  3. Avatar for Heroines 13. Heroines 3 pts. 9,822
  4. Avatar for turkish voluntered 14. turkish voluntered 2 pts. 9,809
  5. Avatar for Czech National Team 15. Czech National Team 1 pt. 9,431
  6. Avatar for The Knights Who Say Ni! 16. The Knights Who Say Ni! 1 pt. 9,069
  7. Avatar for Boinc.be 17. Boinc.be 1 pt. 8,862
  8. Avatar for Ukraine 18. Ukraine 1 pt. 8,724
  9. Avatar for DSN @ Home 19. DSN @ Home 1 pt. 7,694
  10. Avatar for coffeecoffee 20. coffeecoffee 1 pt. 7,655
  1. Avatar for zglloo 151. zglloo Lv 1 1 pt. 7,336
  2. Avatar for Deleted player 152. Deleted player 1 pt. 7,335
  3. Avatar for hat 153. hat Lv 1 1 pt. 7,323
  4. Avatar for armad 154. armad Lv 1 1 pt. 7,281
  5. Avatar for relevanze 155. relevanze Lv 1 1 pt. 7,278
  6. Avatar for Canada_David 156. Canada_David Lv 1 1 pt. 7,248
  7. Avatar for elsie 157. elsie Lv 1 1 pt. 7,238
  8. Avatar for glanz 158. glanz Lv 1 1 pt. 7,214
  9. Avatar for nathanmills 159. nathanmills Lv 1 1 pt. 7,213
  10. Avatar for helper monkey 160. helper monkey Lv 1 1 pt. 7,153

Comments

beta_helix Staff Lv 1

The secondary structure sequence logo predictions are still running, but I will post them here as soon as I get them back from the SAM server.
(I think the server queue might be very long right now or something)

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Valine at residue 120 is highly predicted to be part of a helix. However, the Valine at residue 110 is predicted to have an equal probability of being anything.