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212: Mini-CASP 8-Freestyle

Closed since over 16 years ago

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Summary

Created
October 21, 2009
Expires
Max points
100
Description

Here is the next Mini-CASP target whose solved structure will be released soon. Again we are giving you an extended chain to see what you come up with. This might be difficult since this chain has 149 residues, so we will release Rosetta predictions for this target next week. Until then, good luck freestyle folding! The secondary structure prediction will be posted in the puzzle comments.

Top groups

  1. Avatar for ExPitneyFolders 11. ExPitneyFolders 6 pts. 10,112
  2. Avatar for Deleted group 12. Deleted group pts. 10,082
  3. Avatar for Heroines 13. Heroines 3 pts. 9,822
  4. Avatar for turkish voluntered 14. turkish voluntered 2 pts. 9,809
  5. Avatar for Czech National Team 15. Czech National Team 1 pt. 9,431
  6. Avatar for The Knights Who Say Ni! 16. The Knights Who Say Ni! 1 pt. 9,069
  7. Avatar for Boinc.be 17. Boinc.be 1 pt. 8,862
  8. Avatar for Ukraine 18. Ukraine 1 pt. 8,724
  9. Avatar for DSN @ Home 19. DSN @ Home 1 pt. 7,694
  10. Avatar for coffeecoffee 20. coffeecoffee 1 pt. 7,655
  1. Avatar for katling 71. katling Lv 1 9 pts. 9,403
  2. Avatar for Rhyslarn 72. Rhyslarn Lv 1 8 pts. 9,402
  3. Avatar for Deleted player 73. Deleted player pts. 9,397
  4. Avatar for maxwell_thethird 74. maxwell_thethird Lv 1 8 pts. 9,390
  5. Avatar for cjp 75. cjp Lv 1 7 pts. 9,251
  6. Avatar for BikeLoup 76. BikeLoup Lv 1 7 pts. 9,247
  7. Avatar for tallguy-13088 77. tallguy-13088 Lv 1 7 pts. 9,192
  8. Avatar for drjr 78. drjr Lv 1 6 pts. 9,174
  9. Avatar for Deleted player 79. Deleted player pts. 9,164
  10. Avatar for stormrobberee 80. stormrobberee Lv 1 6 pts. 9,141

Comments

beta_helix Staff Lv 1

The secondary structure sequence logo predictions are still running, but I will post them here as soon as I get them back from the SAM server.
(I think the server queue might be very long right now or something)

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Valine at residue 120 is highly predicted to be part of a helix. However, the Valine at residue 110 is predicted to have an equal probability of being anything.