Placeholder image of a protein
Icon representing a puzzle

227: Mini-CASP 11 - Freestyle

Closed since over 16 years ago

Advanced

Summary

Created
November 25, 2009
Expires
Max points
100
Description

Our 11th Mini-CASP target is another de-novo (or ab-initio) target. This means that there is no solved structure that has a similar sequence that we can start our predictions from. This is exciting because template-free targets are rare so we are lucky to be able to predict this. Since we have no idea where to even start, we are giving you an extended chain to see what you come up with. This might not be easy, so we will give you Rosetta@home predictions for this target as puzzles next week. Until then, good luck freestyle folding! The secondary structure prediction is posted in the puzzle comments.

Top groups

  1. Avatar for sfb579 21. sfb579 1 pt. 9,189
  2. Avatar for Origami 2 22. Origami 2 1 pt. 9,187
  3. Avatar for Ukraine 23. Ukraine 1 pt. 9,163
  4. Avatar for Team Commonwealth 24. Team Commonwealth 1 pt. 9,140
  5. Avatar for BlueScreenGUI 25. BlueScreenGUI 1 pt. 9,093
  6. Avatar for Boinc.be 26. Boinc.be 1 pt. 8,882
  7. Avatar for Czech National Team 27. Czech National Team 1 pt. 8,644
  8. Avatar for Rule Britannia 28. Rule Britannia 1 pt. 8,457
  9. Avatar for DSN @ Home 29. DSN @ Home 1 pt. 8,059
  10. Avatar for Team China 30. Team China 1 pt. 7,794
  1. Avatar for setiman
    1. setiman Lv 1
    100 pts. 10,052
  2. Avatar for maxwell_thethird 2. maxwell_thethird Lv 1 73 pts. 10,052
  3. Avatar for Madde 3. Madde Lv 1 52 pts. 9,986
  4. Avatar for TheGUmmer 4. TheGUmmer Lv 1 36 pts. 9,969
  5. Avatar for Mike Cassidy 5. Mike Cassidy Lv 1 24 pts. 9,968
  6. Avatar for aap 6. aap Lv 1 16 pts. 9,929
  7. Avatar for spvincent 7. spvincent Lv 1 10 pts. 9,843
  8. Avatar for Mark- 8. Mark- Lv 1 6 pts. 9,842
  9. Avatar for mimi 9. mimi Lv 1 4 pts. 9,835
  10. Avatar for CharlieFortsConscience 10. CharlieFortsConscience Lv 1 2 pts. 9,807

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Leucine at residue 69 is highly predicted to be part of a helix. However, the Alanine at residue 40 is predicted to have an equal probability of being loop or strand.