231: Mini-CASP 12 - Freestyle

Closed since over 16 years ago

Summary

• Created: December 08, 2009
• Expires: December 13, 2009 at 23:00 UTC
• Max points: 100

Description

Our 12th Mini-CASP target is another de-novo (or ab-initio) target. This means that there is no solved structure that has a similar sequence that we can start our predictions from. This is exciting because template-free targets are rare so we are lucky to be able to predict this. Since we have no idea where to even start, we are giving you an extended chain to see what you come up with. Until then, good luck freestyle folding! The secondary structure prediction is posted in the puzzle comments.

Top groups

• 1. Void Crushers 100 pts. 10,511
• 2. Richard Dawkins Foundation 85 pts. 10,485
• 3. Russian team 71 pts. 10,266
• 4. Deleted group pts. 10,190
• 5. Contenders 49 pts. 10,138
• 6. SETI.Germany 41 pts. 9,990
• 7. Natural Abilities 33 pts. 9,987
• 8. ExPitneyFolders 27 pts. 9,842
• 9. Crunching Family 22 pts. 9,803
• 10. Deleted group pts. 9,794

Top soloists

• 41. anne romaine 26 pts. 9,454
• 42. kaworld3 25 pts. 9,450
• 43. spvincent 24 pts. 9,446
• 44. acarlisle 23 pts. 9,413
• 45. Bluefire526 22 pts. 9,388
• 46. SouperGenious 21 pts. 9,384
• 47. Deleted player pts. 9,377
• 48. themarquis 19 pts. 9,360
• 49. Museka 19 pts. 9,349
• 50. auntdeen 18 pts. 9,347

Comments

[beta_helix]

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Leucine at residue 53 is highly predicted to be part of a helix. However, the Valine at residue 8 is predicted to have an equal probability of being loop or strand.