Placeholder image of a protein
Icon representing a puzzle

246: Mini-CASP 15-Freestyle B

Closed since about 16 years ago

Advanced

Summary

Created
January 13, 2010
Expires
Max points
100
Description

Here is Mini-CASP 15 again, this time with the secondary structure predictions posted in the puzzle comments. Please try to use the secondary structure predictions for this puzzle so that we can compare the results to Freestyle A once the native is released. Thanks!

Top groups

  1. Avatar for Crunching Family 11. Crunching Family 9 pts. 8,955
  2. Avatar for L'Alliance Francophone 12. L'Alliance Francophone 7 pts. 8,943
  3. Avatar for Deleted group 13. Deleted group pts. 8,902
  4. Avatar for turkish voluntered 14. turkish voluntered 4 pts. 8,858
  5. Avatar for Team Commonwealth 15. Team Commonwealth 3 pts. 8,799
  6. Avatar for sfb579 16. sfb579 2 pts. 8,722
  7. Avatar for Ukraine 17. Ukraine 1 pt. 8,710
  8. Avatar for Cedarburg H.S. 18. Cedarburg H.S. 1 pt. 8,610
  9. Avatar for Boinc.be 19. Boinc.be 1 pt. 8,580
  10. Avatar for Team South Africa 20. Team South Africa 1 pt. 8,566
  1. Avatar for auntdeen 71. auntdeen Lv 1 10 pts. 8,732
  2. Avatar for deep thought 72. deep thought Lv 1 10 pts. 8,722
  3. Avatar for richard c 73. richard c Lv 1 9 pts. 8,714
  4. Avatar for Deleted player 74. Deleted player pts. 8,712
  5. Avatar for Sergyg 75. Sergyg Lv 1 8 pts. 8,710
  6. Avatar for Jeedy 76. Jeedy Lv 1 8 pts. 8,702
  7. Avatar for Bithalbierer 77. Bithalbierer Lv 1 8 pts. 8,687
  8. Avatar for not_publius 78. not_publius Lv 1 7 pts. 8,660
  9. Avatar for VievaWood 79. VievaWood Lv 1 7 pts. 8,656
  10. Avatar for Leveque 80. Leveque Lv 1 7 pts. 8,652

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Alanine at residue 10 is highly predicted to be part of a helix. However, the two Valines at residues 40 and 41 are both predicted to have an equal probability of being in a sheet or loop!