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246: Mini-CASP 15-Freestyle B

Closed since about 16 years ago

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Summary

Created
January 13, 2010
Expires
Max points
100
Description

Here is Mini-CASP 15 again, this time with the secondary structure predictions posted in the puzzle comments. Please try to use the secondary structure predictions for this puzzle so that we can compare the results to Freestyle A once the native is released. Thanks!

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  1. Avatar for Mark-
    1. Mark- Lv 1
    100 pts. 9,296
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  8. Avatar for keypad5 8. keypad5 Lv 1 83 pts. 9,205
  9. Avatar for vertex 9. vertex Lv 1 81 pts. 9,198
  10. Avatar for mat747 10. mat747 Lv 1 79 pts. 9,182

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Alanine at residue 10 is highly predicted to be part of a helix. However, the two Valines at residues 40 and 41 are both predicted to have an equal probability of being in a sheet or loop!