Placeholder image of a protein
Icon representing a puzzle

246: Mini-CASP 15-Freestyle B

Closed since about 16 years ago

Advanced

Summary

Created
January 13, 2010
Expires
Max points
100
Description

Here is Mini-CASP 15 again, this time with the secondary structure predictions posted in the puzzle comments. Please try to use the secondary structure predictions for this puzzle so that we can compare the results to Freestyle A once the native is released. Thanks!

Top groups

  1. Avatar for Contenders
    1. Contenders
    100 pts. 9,296
  2. Avatar for Void Crushers 2. Void Crushers 83 pts. 9,287
  3. Avatar for Russian team 3. Russian team 68 pts. 9,208
  4. Avatar for Richard Dawkins Foundation 4. Richard Dawkins Foundation 55 pts. 9,206
  5. Avatar for SETI.Germany 5. SETI.Germany 44 pts. 9,115
  6. Avatar for ExPitneyFolders 6. ExPitneyFolders 35 pts. 9,070
  7. Avatar for Deleted group 7. Deleted group pts. 9,069
  8. Avatar for Deleted group 8. Deleted group pts. 9,048
  9. Avatar for Skeptics Guide to the Universe 9. Skeptics Guide to the Universe 16 pts. 9,019
  10. Avatar for Natural Abilities 10. Natural Abilities 12 pts. 8,969
  1. Avatar for maxwell_thethird 111. maxwell_thethird Lv 1 2 pts. 8,472
  2. Avatar for Corn 112. Corn Lv 1 2 pts. 8,468
  3. Avatar for umfgzahr 113. umfgzahr Lv 1 1 pt. 8,451
  4. Avatar for pruneau_44 114. pruneau_44 Lv 1 1 pt. 8,451
  5. Avatar for seppomat 115. seppomat Lv 1 1 pt. 8,442
  6. Avatar for Ungoliant 116. Ungoliant Lv 1 1 pt. 8,438
  7. Avatar for maniek82 117. maniek82 Lv 1 1 pt. 8,420
  8. Avatar for Chandra 118. Chandra Lv 1 1 pt. 8,406
  9. Avatar for Mike Cassidy 119. Mike Cassidy Lv 1 1 pt. 8,398
  10. Avatar for Radagast 120. Radagast Lv 1 1 pt. 8,395

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Alanine at residue 10 is highly predicted to be part of a helix. However, the two Valines at residues 40 and 41 are both predicted to have an equal probability of being in a sheet or loop!