Placeholder image of a protein
Icon representing a puzzle

246: Mini-CASP 15-Freestyle B

Closed since about 16 years ago

Advanced

Summary

Created
January 13, 2010
Expires
Max points
100
Description

Here is Mini-CASP 15 again, this time with the secondary structure predictions posted in the puzzle comments. Please try to use the secondary structure predictions for this puzzle so that we can compare the results to Freestyle A once the native is released. Thanks!

Top groups

  1. Avatar for Contenders
    1. Contenders
    100 pts. 9,296
  2. Avatar for Void Crushers 2. Void Crushers 83 pts. 9,287
  3. Avatar for Russian team 3. Russian team 68 pts. 9,208
  4. Avatar for Richard Dawkins Foundation 4. Richard Dawkins Foundation 55 pts. 9,206
  5. Avatar for SETI.Germany 5. SETI.Germany 44 pts. 9,115
  6. Avatar for ExPitneyFolders 6. ExPitneyFolders 35 pts. 9,070
  7. Avatar for Deleted group 7. Deleted group pts. 9,069
  8. Avatar for Deleted group 8. Deleted group pts. 9,048
  9. Avatar for Skeptics Guide to the Universe 9. Skeptics Guide to the Universe 16 pts. 9,019
  10. Avatar for Natural Abilities 10. Natural Abilities 12 pts. 8,969
  1. Avatar for Nicolien 61. Nicolien Lv 1 15 pts. 8,811
  2. Avatar for heather-1 62. heather-1 Lv 1 14 pts. 8,804
  3. Avatar for JFexp 63. JFexp Lv 1 14 pts. 8,801
  4. Avatar for Canada_David 64. Canada_David Lv 1 13 pts. 8,799
  5. Avatar for Lockhart 65. Lockhart Lv 1 13 pts. 8,794
  6. Avatar for lilovip 66. lilovip Lv 1 12 pts. 8,786
  7. Avatar for rmatting 67. rmatting Lv 1 12 pts. 8,776
  8. Avatar for gcm24 68. gcm24 Lv 1 11 pts. 8,773
  9. Avatar for SKSbell 69. SKSbell Lv 1 11 pts. 8,770
  10. Avatar for stormrobberee 70. stormrobberee Lv 1 10 pts. 8,751

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Alanine at residue 10 is highly predicted to be part of a helix. However, the two Valines at residues 40 and 41 are both predicted to have an equal probability of being in a sheet or loop!