Placeholder image of a protein
Icon representing a puzzle

278: Mini-CASP 19 - Freestyle Part Deux

Closed since about 16 years ago

Advanced Advanced

Summary

Created
March 25, 2010
Expires
Max points
100
Description

As promised, this puzzle is an exact repost of puzzle 274: Mini-CASP 19 - Just Freestyle, but this time we are giving you some secondary structure predictions. These secondary structure predictions are posted in the puzzle comments. We hope they help!

Top groups

  1. Avatar for Crunching Family 11. Crunching Family 4 pts. 9,851
  2. Avatar for Team New Zealand 12. Team New Zealand 2 pts. 9,541
  3. Avatar for Team Commonwealth 13. Team Commonwealth 2 pts. 9,533
  4. Avatar for sfb579 14. sfb579 1 pt. 9,046
  5. Avatar for Mad Lab 15. Mad Lab 1 pt. 9,029
  6. Avatar for Boinc.be 16. Boinc.be 1 pt. 8,691
  7. Avatar for Ukraine 17. Ukraine 1 pt. 8,606
  8. Avatar for Rechenkraft.net 18. Rechenkraft.net 1 pt. 7,961
  9. Avatar for medical mechanica 19. medical mechanica 1 pt. 7,341
  10. Avatar for DSN @ Home 20. DSN @ Home 1 pt. 7,249
  1. Avatar for teaguehopkins 111. teaguehopkins Lv 1 1 pt. 8,486
  2. Avatar for stormrobberee 112. stormrobberee Lv 1 1 pt. 8,484
  3. Avatar for Ungoliant 113. Ungoliant Lv 1 1 pt. 8,432
  4. Avatar for HillObserver 114. HillObserver Lv 1 1 pt. 8,419
  5. Avatar for umfgzahr 115. umfgzahr Lv 1 1 pt. 8,367
  6. Avatar for Tac1 116. Tac1 Lv 1 1 pt. 8,314
  7. Avatar for leahcim165 117. leahcim165 Lv 1 1 pt. 8,202
  8. Avatar for sktbrd341 118. sktbrd341 Lv 1 1 pt. 8,163
  9. Avatar for elpaxoudis 119. elpaxoudis Lv 1 1 pt. 8,117
  10. Avatar for bkarcher97 120. bkarcher97 Lv 1 1 pt. 8,069

Comments

beta_helix Staff Lv 1

Please try to use these secondary structure predictions:

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Alanine at residue 7 is highly predicted to be part of a helix. However, the Alanine at residue 11 is predicted to have an equal probability of being anything!