Placeholder image of a protein
Icon representing a puzzle

278: Mini-CASP 19 - Freestyle Part Deux

Closed since about 16 years ago

Advanced

Summary

Created
March 25, 2010
Expires
Max points
100
Description

As promised, this puzzle is an exact repost of puzzle 274: Mini-CASP 19 - Just Freestyle, but this time we are giving you some secondary structure predictions. These secondary structure predictions are posted in the puzzle comments. We hope they help!

Top groups

  1. Avatar for Crunching Family 11. Crunching Family 4 pts. 9,851
  2. Avatar for Team New Zealand 12. Team New Zealand 2 pts. 9,541
  3. Avatar for Team Commonwealth 13. Team Commonwealth 2 pts. 9,533
  4. Avatar for sfb579 14. sfb579 1 pt. 9,046
  5. Avatar for Mad Lab 15. Mad Lab 1 pt. 9,029
  6. Avatar for Boinc.be 16. Boinc.be 1 pt. 8,691
  7. Avatar for Ukraine 17. Ukraine 1 pt. 8,606
  8. Avatar for Rechenkraft.net 18. Rechenkraft.net 1 pt. 7,961
  9. Avatar for medical mechanica 19. medical mechanica 1 pt. 7,341
  10. Avatar for DSN @ Home 20. DSN @ Home 1 pt. 7,249
  1. Avatar for Ujelet 41. Ujelet Lv 1 23 pts. 9,913
  2. Avatar for pk009 42. pk009 Lv 1 22 pts. 9,904
  3. Avatar for Mike Cassidy 43. Mike Cassidy Lv 1 21 pts. 9,864
  4. Avatar for calhoun 44. calhoun Lv 1 20 pts. 9,851
  5. Avatar for infjamc 45. infjamc Lv 1 20 pts. 9,837
  6. Avatar for cutthepeace 46. cutthepeace Lv 1 19 pts. 9,803
  7. Avatar for dimension9 47. dimension9 Lv 1 18 pts. 9,803
  8. Avatar for Museka 48. Museka Lv 1 17 pts. 9,799
  9. Avatar for Festering Wound 49. Festering Wound Lv 1 16 pts. 9,772
  10. Avatar for tedeum 50. tedeum Lv 1 16 pts. 9,755

Comments

beta_helix Staff Lv 1

Please try to use these secondary structure predictions:

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Alanine at residue 7 is highly predicted to be part of a helix. However, the Alanine at residue 11 is predicted to have an equal probability of being anything!