Placeholder image of a protein
Icon representing a puzzle

278: Mini-CASP 19 - Freestyle Part Deux

Closed since almost 16 years ago

Advanced

Summary

Created
March 25, 2010
Expires
Max points
100
Description

As promised, this puzzle is an exact repost of puzzle 274: Mini-CASP 19 - Just Freestyle, but this time we are giving you some secondary structure predictions. These secondary structure predictions are posted in the puzzle comments. We hope they help!

Top groups

  1. Avatar for Void Crushers
    1. Void Crushers
    100 pts. 11,009
  2. Avatar for Contenders 2. Contenders 78 pts. 10,941
  3. Avatar for Richard Dawkins Foundation 3. Richard Dawkins Foundation 60 pts. 10,826
  4. Avatar for Russian team 4. Russian team 45 pts. 10,384
  5. Avatar for Deleted group 5. Deleted group pts. 10,345
  6. Avatar for SETI.Germany 6. SETI.Germany 24 pts. 10,185
  7. Avatar for Deleted group 7. Deleted group pts. 10,098
  8. Avatar for Natural Abilities 8. Natural Abilities 12 pts. 9,950
  9. Avatar for ExPitneyFolders 9. ExPitneyFolders 8 pts. 9,934
  10. Avatar for L'Alliance Francophone 10. L'Alliance Francophone 6 pts. 9,930
  1. Avatar for BootsMcGraw 11. BootsMcGraw Lv 1 4 pts. 10,856
  2. Avatar for setiman 12. setiman Lv 1 2 pts. 10,826
  3. Avatar for keypad5 13. keypad5 Lv 1 2 pts. 10,821
  4. Avatar for maxwell_thethird 14. maxwell_thethird Lv 1 1 pt. 10,776
  5. Avatar for traal 15. traal Lv 1 1 pt. 10,772
  6. Avatar for Tamison 16. Tamison Lv 1 1 pt. 10,763
  7. Avatar for Susanne 17. Susanne Lv 1 1 pt. 10,141
  8. Avatar for pk009 18. pk009 Lv 1 1 pt. 10,138
  9. Avatar for lou 19. lou Lv 1 1 pt. 10,103
  10. Avatar for spvincent 20. spvincent Lv 1 1 pt. 10,030

Comments

beta_helix Staff Lv 1

Please try to use these secondary structure predictions:

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Alanine at residue 7 is highly predicted to be part of a helix. However, the Alanine at residue 11 is predicted to have an equal probability of being anything!