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278: Mini-CASP 19 - Freestyle Part Deux

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Created
March 25, 2010
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Max points
100
Description

As promised, this puzzle is an exact repost of puzzle 274: Mini-CASP 19 - Just Freestyle, but this time we are giving you some secondary structure predictions. These secondary structure predictions are posted in the puzzle comments. We hope they help!

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Comments

beta_helix Staff Lv 1

Please try to use these secondary structure predictions:

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Alanine at residue 7 is highly predicted to be part of a helix. However, the Alanine at residue 11 is predicted to have an equal probability of being anything!