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386: De-novo Freestyle

Closed since over 15 years ago

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Summary

Created
December 02, 2010
Expires
Max points
100
Description

It's been a while since we gave you a freestyle puzzle to work on, but this unsolved protein does not have any templates. We will post the secondary structure predictions in the puzzle comments when they come back from the SAM server.

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  1. Avatar for Zoome 261. Zoome Lv 1 1 pt. 0
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  5. Avatar for jonallen 265. jonallen Lv 1 1 pt. 0
  6. Avatar for ashot 266. ashot Lv 1 1 pt. 0
  7. Avatar for FoldPrefect 267. FoldPrefect Lv 1 1 pt. 0
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  9. Avatar for Azrail01 269. Azrail01 Lv 1 1 pt. 0
  10. Avatar for eki 270. eki Lv 1 1 pt. 0

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Leucine at residue 21 is highly predicted to be part of a helix. However, the Leucine at residue 29 is predicted to have an equal probability of being anything.