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386: De-novo Freestyle

Closed since over 15 years ago

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Summary

Created
December 02, 2010
Expires
Max points
100
Description

It's been a while since we gave you a freestyle puzzle to work on, but this unsolved protein does not have any templates. We will post the secondary structure predictions in the puzzle comments when they come back from the SAM server.

Top groups

  1. Avatar for Phe-Thr-Trp 21. Phe-Thr-Trp 1 pt. 9,991
  2. Avatar for Deleted group 22. Deleted group pts. 9,845
  3. Avatar for BOINC@Poland 23. BOINC@Poland 1 pt. 9,581
  4. Avatar for Crunching Family 24. Crunching Family 1 pt. 9,253
  5. Avatar for turkish voluntered 25. turkish voluntered 1 pt. 9,253
  6. Avatar for Team Commonwealth 26. Team Commonwealth 1 pt. 9,247
  7. Avatar for Czech National Team 27. Czech National Team 1 pt. 9,208
  8. Avatar for Team South Africa 28. Team South Africa 1 pt. 8,597
  9. Avatar for DSN @ Home 29. DSN @ Home 1 pt. 8,177
  10. Avatar for Friday Lab 30. Friday Lab 1 pt. 7,812
  1. Avatar for Museka 81. Museka Lv 1 20 pts. 10,261
  2. Avatar for jobo0502 82. jobo0502 Lv 1 19 pts. 10,250
  3. Avatar for Darkknight900 83. Darkknight900 Lv 1 19 pts. 10,237
  4. Avatar for DC1600 84. DC1600 Lv 1 18 pts. 10,223
  5. Avatar for talon5454 85. talon5454 Lv 1 18 pts. 10,218
  6. Avatar for Thraxzer 86. Thraxzer Lv 1 18 pts. 10,197
  7. Avatar for mberna00 87. mberna00 Lv 1 17 pts. 10,183
  8. Avatar for ZiiONIC 88. ZiiONIC Lv 1 17 pts. 10,179
  9. Avatar for vizerot 89. vizerot Lv 1 16 pts. 10,170
  10. Avatar for barbaranne 90. barbaranne Lv 1 16 pts. 10,153

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Leucine at residue 21 is highly predicted to be part of a helix. However, the Leucine at residue 29 is predicted to have an equal probability of being anything.