Placeholder image of a protein
Icon representing a puzzle

398: De-novo Freestyle 3

Closed since about 15 years ago

Advanced

Summary

Created
February 06, 2011
Expires
Max points
100
Description

This currently unsolved protein does not have any templates that we can use, so we are giving it to you as an extended chain. Use all your skills to fold it up as best as you can. The secondary structure predictions are posted in the puzzle comments.

Top groups

  1. Avatar for Deleted group 21. Deleted group pts. 9,564
  2. Avatar for Czech National Team 22. Czech National Team 1 pt. 8,966
  3. Avatar for Hungary 23. Hungary 1 pt. 8,512
  4. Avatar for Extraterrestrials 24. Extraterrestrials 1 pt. 8,162
  5. Avatar for Deleted group 25. Deleted group pts. 8,060
  6. Avatar for Boinc.be 26. Boinc.be 1 pt. 7,691
  7. Avatar for Powerfolders 27. Powerfolders 1 pt. 7,686
  8. Avatar for xkcd 28. xkcd 1 pt. 7,684
  9. Avatar for DSN @ Home 29. DSN @ Home 1 pt. 7,546
  10. Avatar for Russian team 30. Russian team 1 pt. 2,401
  1. Avatar for Carbone 211. Carbone Lv 1 1 pt. 8,040
  2. Avatar for sbg97 212. sbg97 Lv 1 1 pt. 8,019
  3. Avatar for christian_foucault@agilent.com 213. christian_foucault@agilent.com Lv 1 1 pt. 7,985
  4. Avatar for Tropylium 214. Tropylium Lv 1 1 pt. 7,977
  5. Avatar for OverVoid 215. OverVoid Lv 1 1 pt. 7,958
  6. Avatar for Vihanga 216. Vihanga Lv 1 1 pt. 7,929
  7. Avatar for nigelsin 217. nigelsin Lv 1 1 pt. 7,903
  8. Avatar for reginald_herring 218. reginald_herring Lv 1 1 pt. 7,902
  9. Avatar for amlweems 219. amlweems Lv 1 1 pt. 7,872
  10. Avatar for bobbyliu7303 220. bobbyliu7303 Lv 1 1 pt. 7,858

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Leucine at residue 26 is highly predicted to be part of a helix. However, the Leucine at residue 34 is predicted to have an equal probability of being anything.