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404: De-novo Freestyle 4

Closed since about 15 years ago

Advanced Overall Prediction

Summary

Created
March 09, 2011
Expires
Max points
100
Description

This currently unsolved protein does not have any templates that we can use, so we are giving it to you as an extended chain. Use all your skills to fold it up as best as you can. The secondary structure predictions are posted in the puzzle comments, but we have included them in the starting structure as well.

Top groups

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  7. Avatar for TT-group 17. TT-group 1 pt. 9,609
  8. Avatar for Team Commonwealth 18. Team Commonwealth 1 pt. 9,522
  9. Avatar for Deleted group 19. Deleted group pts. 9,439
  10. Avatar for xkcd 20. xkcd 1 pt. 9,218
  1. Avatar for VictorSouza 221. VictorSouza Lv 1 1 pt. 7,490
  2. Avatar for dr106 222. dr106 Lv 1 1 pt. 7,484
  3. Avatar for Hell_Kitty 223. Hell_Kitty Lv 1 1 pt. 7,463
  4. Avatar for ludington 224. ludington Lv 1 1 pt. 7,445
  5. Avatar for ciccioporco 225. ciccioporco Lv 1 1 pt. 7,413
  6. Avatar for BobbyG 226. BobbyG Lv 1 1 pt. 7,395
  7. Avatar for backster 227. backster Lv 1 1 pt. 7,383
  8. Avatar for ranger911 228. ranger911 Lv 1 1 pt. 7,377
  9. Avatar for mya 229. mya Lv 1 1 pt. 7,369
  10. Avatar for LadyInBlack 230. LadyInBlack Lv 1 1 pt. 7,348

Comments

beta_helix Staff Lv 1

As requested in the feedback, http://fold.it/portal/node/989298, these secondary structure predictions have been pre-loaded into this freestyle puzzle.

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Isoleucine at residue 29 is highly predicted to be part of a helix. However, the Leucine at residue 97 is predicted to have an equal probability of being anything.