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406: Freestyle Nitric Oxide Puzzle

Closed since about 15 years ago

Advanced Overall Prediction

Summary

Created
March 22, 2011
Expires
Max points
100
Description

***SEQUENCE LOGO NOW POSTED IN PUZZLE COMMENTS*** There will be more puzzles about this currently unsolved protein, but we wanted to start you off with it as an extended chain. Use all your skills to fold it up as best as you can. We will post a blog with details about this protein soon!

Top groups

  1. Avatar for Slovak National Team 11. Slovak National Team 8 pts. 11,141
  2. Avatar for Russian team 12. Russian team 6 pts. 11,097
  3. Avatar for Deleted group 13. Deleted group pts. 11,029
  4. Avatar for Deleted group 14. Deleted group pts. 10,851
  5. Avatar for TT-group 15. TT-group 2 pts. 10,824
  6. Avatar for Penny-Arcade 16. Penny-Arcade 2 pts. 10,733
  7. Avatar for Deleted group 17. Deleted group pts. 10,711
  8. Avatar for Czech National Team 18. Czech National Team 1 pt. 10,569
  9. Avatar for Team Commonwealth 19. Team Commonwealth 1 pt. 10,561
  10. Avatar for Mojo Risin' 20. Mojo Risin' 1 pt. 10,173
  1. Avatar for Deleted player 161. Deleted player pts. 8,673
  2. Avatar for richard c 162. richard c Lv 1 2 pts. 8,637
  3. Avatar for test 163. test Lv 1 2 pts. 8,592
  4. Avatar for christian_foucault@agilent.com 164. christian_foucault@agilent.com Lv 1 2 pts. 8,508
  5. Avatar for michielgkalkman 165. michielgkalkman Lv 1 1 pt. 8,508
  6. Avatar for pruneau_44 166. pruneau_44 Lv 1 1 pt. 8,495
  7. Avatar for madpenguin 167. madpenguin Lv 1 1 pt. 8,473
  8. Avatar for Paul Nice 168. Paul Nice Lv 1 1 pt. 8,469
  9. Avatar for Yeaah123 169. Yeaah123 Lv 1 1 pt. 8,409
  10. Avatar for Xyaneon 170. Xyaneon Lv 1 1 pt. 8,332

Comments

beta_helix Staff Lv 1

The SAM T08 server seems to be down, so we used some basic secondary structure predictions (which are the ones shown in the puzzle)

We'll post a sequence logo when the SAM server comes back up!

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Isoleucine at residue 25 is highly predicted to be part of a helix. However, the Leucine at residue 133 is predicted to be part of a beta sheet.