Placeholder image of a protein
Icon representing a puzzle

434: De-novo Freestyle 9

Closed since over 14 years ago

Advanced Overall Prediction

Summary

Created
June 27, 2011
Expires
Max points
100
Description

We are giving you this currently unsolved protein as an extended chain. Use all your skills to fold it up as best as you can. The secondary structure predictions are posted in the puzzle comments, but we have included them in the starting structure as well.

Top groups

  1. Avatar for foldeRNA
    1. foldeRNA
    100 pts. 11,066
  2. Avatar for Void Crushers 2. Void Crushers 85 pts. 10,860
  3. Avatar for Contenders 3. Contenders 71 pts. 10,849
  4. Avatar for Anthropic Dreams 4. Anthropic Dreams 60 pts. 10,816
  5. Avatar for Go Science 5. Go Science 49 pts. 10,659
  6. Avatar for Deleted group 6. Deleted group pts. 10,651
  7. Avatar for L'Alliance Francophone 7. L'Alliance Francophone 33 pts. 10,497
  8. Avatar for Russian team 8. Russian team 27 pts. 10,419
  9. Avatar for Freedom Folders 9. Freedom Folders 22 pts. 10,400
  10. Avatar for SETI.Germany 10. SETI.Germany 17 pts. 10,319
  1. Avatar for sbea3 141. sbea3 Lv 1 2 pts. 9,177
  2. Avatar for salad4liza 142. salad4liza Lv 1 2 pts. 9,169
  3. Avatar for Quark150 143. Quark150 Lv 1 2 pts. 9,167
  4. Avatar for HRM Chatzibarbakarapapadopoulos 144. HRM Chatzibarbakarapapadopoulos Lv 1 2 pts. 9,156
  5. Avatar for hat 145. hat Lv 1 2 pts. 9,151
  6. Avatar for birdy_ssr 146. birdy_ssr Lv 1 2 pts. 9,135
  7. Avatar for TrelosEpistimonas 147. TrelosEpistimonas Lv 1 2 pts. 9,130
  8. Avatar for joschi 148. joschi Lv 1 2 pts. 9,128
  9. Avatar for Kinx 149. Kinx Lv 1 2 pts. 9,110
  10. Avatar for tjohnson 150. tjohnson Lv 1 2 pts. 9,103

Comments

beta_helix Staff Lv 1

These secondary structure predictions have been pre-loaded into this freestyle puzzle.

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Leucine at residue 18 is highly predicted to be part of a sheet. However, the Leucines at residue 122-123 are highly predicted to be in a helix.