Placeholder image of a protein
Icon representing a puzzle

444: De-novo Freestyle 11

Closed since over 14 years ago

Advanced Overall Prediction

Summary

Created
August 03, 2011
Expires
Max points
100
Description

We are giving you this currently unsolved protein as an extended chain. Use all your skills to fold it up as best as you can. The secondary structure predictions are posted in the puzzle comments, but we have included them in the starting structure as well.

Top groups

  1. Avatar for ROMANIA Team 21. ROMANIA Team 1 pt. 8,815
  2. Avatar for Hungary 22. Hungary 1 pt. 8,247
  3. Avatar for Rechenkraft.net 23. Rechenkraft.net 1 pt. 7,984
  4. Avatar for Friday Lab 24. Friday Lab 1 pt. 7,926
  5. Avatar for DSN @ Home 25. DSN @ Home 1 pt. 7,838
  6. Avatar for Freedom Folders 26. Freedom Folders 1 pt. 1,045
  1. Avatar for Drachen36 121. Drachen36 Lv 1 2 pts. 9,266
  2. Avatar for mitarcher 122. mitarcher Lv 1 2 pts. 9,260
  3. Avatar for Dyack 123. Dyack Lv 1 2 pts. 9,251
  4. Avatar for foldithl1 124. foldithl1 Lv 1 2 pts. 9,240
  5. Avatar for Brewster 125. Brewster Lv 1 2 pts. 9,224
  6. Avatar for folditlady 126. folditlady Lv 1 2 pts. 9,214
  7. Avatar for calhoun 127. calhoun Lv 1 2 pts. 9,212
  8. Avatar for mirjamvandelft 128. mirjamvandelft Lv 1 2 pts. 9,200
  9. Avatar for honda 129. honda Lv 1 2 pts. 9,194
  10. Avatar for RyeSnake 130. RyeSnake Lv 1 1 pt. 9,191

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Leucine at residue 79 is highly predicted to be part of a helix. However, the Isoleucine at residue 65 has an equal probability of being anything.