Placeholder image of a protein
Icon representing a puzzle

469: De-novo Freestyle 14

Closed since over 14 years ago

Advanced Overall Prediction

Summary

Created
October 17, 2011
Expires
Max points
100
Description

We are giving you this currently unsolved protein as an extended chain. Use all your beta-sheet forming skills to fold it up as best as you can. The secondary structure predictions are posted in the puzzle comments, but we have included them in the starting structure as well.

Top groups

  1. Avatar for Team China 31. Team China 1 pt. 9,057
  2. Avatar for Valencia 32. Valencia 1 pt. 8,633
  3. Avatar for Hungary 33. Hungary 1 pt. 8,473
  4. Avatar for Street Smarts 34. Street Smarts 1 pt. 8,372
  5. Avatar for Deleted group 35. Deleted group pts. 8,283
  6. Avatar for Minions of TWIS 36. Minions of TWIS 1 pt. 8,212
  7. Avatar for Crunching Family 37. Crunching Family 1 pt. 8,155
  8. Avatar for DSN @ Home 38. DSN @ Home 1 pt. 7,517
  9. Avatar for test_group1 39. test_group1 1 pt. 6,151
  1. Avatar for bendbob 111. bendbob Lv 1 41 pts. 9,747
  2. Avatar for RAntonello1 112. RAntonello1 Lv 1 40 pts. 9,745
  3. Avatar for pfeiffelfloyd 113. pfeiffelfloyd Lv 1 40 pts. 9,742
  4. Avatar for nerdyshygirl 114. nerdyshygirl Lv 1 39 pts. 9,741
  5. Avatar for Incongruous 115. Incongruous Lv 1 39 pts. 9,739
  6. Avatar for harvardman 116. harvardman Lv 1 39 pts. 9,720
  7. Avatar for Deleted player 117. Deleted player pts. 9,719
  8. Avatar for anne romaine 118. anne romaine Lv 1 38 pts. 9,710
  9. Avatar for philcalhoun 119. philcalhoun Lv 1 38 pts. 9,710
  10. Avatar for Schleicher 120. Schleicher Lv 1 37 pts. 9,703

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Valine at residue 12 is highly predicted to be part of a sheet. However, the Valine at residue 41 has an equal probability of being anything.