Placeholder image of a protein
Icon representing a puzzle

469: De-novo Freestyle 14

Closed since over 14 years ago

Advanced Overall Prediction

Summary

Created
October 17, 2011
Expires
Max points
100
Description

We are giving you this currently unsolved protein as an extended chain. Use all your beta-sheet forming skills to fold it up as best as you can. The secondary structure predictions are posted in the puzzle comments, but we have included them in the starting structure as well.

Top groups

  1. Avatar for Team China 31. Team China 1 pt. 9,057
  2. Avatar for Valencia 32. Valencia 1 pt. 8,633
  3. Avatar for Hungary 33. Hungary 1 pt. 8,473
  4. Avatar for Street Smarts 34. Street Smarts 1 pt. 8,372
  5. Avatar for Deleted group 35. Deleted group pts. 8,283
  6. Avatar for Minions of TWIS 36. Minions of TWIS 1 pt. 8,212
  7. Avatar for Crunching Family 37. Crunching Family 1 pt. 8,155
  8. Avatar for DSN @ Home 38. DSN @ Home 1 pt. 7,517
  9. Avatar for test_group1 39. test_group1 1 pt. 6,151
  1. Avatar for ezgame 211. ezgame Lv 1 15 pts. 9,314
  2. Avatar for pyfortin 212. pyfortin Lv 1 15 pts. 9,313
  3. Avatar for Hyacinth04 213. Hyacinth04 Lv 1 15 pts. 9,311
  4. Avatar for dbuske 214. dbuske Lv 1 15 pts. 9,305
  5. Avatar for SimplySue 215. SimplySue Lv 1 14 pts. 9,305
  6. Avatar for smp197 216. smp197 Lv 1 14 pts. 9,304
  7. Avatar for gd2shoe 217. gd2shoe Lv 1 14 pts. 9,303
  8. Avatar for Barmy 218. Barmy Lv 1 14 pts. 9,301
  9. Avatar for Schnecke 219. Schnecke Lv 1 14 pts. 9,301
  10. Avatar for Merf 220. Merf Lv 1 14 pts. 9,291

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the amino acid Valine at residue 12 is highly predicted to be part of a sheet. However, the Valine at residue 41 has an equal probability of being anything.