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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for Crunching Family 31. Crunching Family 1 pt. 8,566
  2. Avatar for Czech National Team 32. Czech National Team 1 pt. 8,418
  3. Avatar for Edugeek 33. Edugeek 1 pt. 8,406
  4. Avatar for Deleted group 34. Deleted group pts. 8,353
  5. Avatar for HMT heritage 35. HMT heritage 1 pt. 8,304
  6. Avatar for Deleted group 36. Deleted group pts. 7,917
  7. Avatar for Richard Dawkins Foundation 37. Richard Dawkins Foundation 1 pt. 7,851
  8. Avatar for Bree Fradley Manning 38. Bree Fradley Manning 1 pt. 7,835
  9. Avatar for Dutch Power Cows 39. Dutch Power Cows 1 pt. 7,646
  10. Avatar for DSN @ Home 40. DSN @ Home 1 pt. 7,520
  1. Avatar for djag 171. djag Lv 1 13 pts. 9,358
  2. Avatar for katling 172. katling Lv 1 13 pts. 9,351
  3. Avatar for cherif 173. cherif Lv 1 13 pts. 9,349
  4. Avatar for Sneezie 174. Sneezie Lv 1 13 pts. 9,347
  5. Avatar for monkry 175. monkry Lv 1 13 pts. 9,346
  6. Avatar for MataHari 176. MataHari Lv 1 12 pts. 9,338
  7. Avatar for acollard 177. acollard Lv 1 12 pts. 9,334
  8. Avatar for Coskun 178. Coskun Lv 1 12 pts. 9,317
  9. Avatar for silverberg 179. silverberg Lv 1 12 pts. 9,304
  10. Avatar for Jajaboman 180. Jajaboman Lv 1 12 pts. 9,302

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.