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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Intermediate Intermediate Intermediate Intermediate Intermediate Intermediate Intermediate Intermediate Overall Overall Overall Overall Overall Overall Overall Overall Overall Prediction Prediction Prediction Prediction Prediction Prediction Prediction Prediction Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

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  2. Avatar for Czech National Team 32. Czech National Team 1 pt. 8,418
  3. Avatar for Edugeek 33. Edugeek 1 pt. 8,406
  4. Avatar for Deleted group 34. Deleted group pts. 8,353
  5. Avatar for HMT heritage 35. HMT heritage 1 pt. 8,304
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  7. Avatar for Richard Dawkins Foundation 37. Richard Dawkins Foundation 1 pt. 7,851
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  9. Avatar for Dutch Power Cows 39. Dutch Power Cows 1 pt. 7,646
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  1. Avatar for DC1600 201. DC1600 Lv 1 9 pts. 9,183
  2. Avatar for tealight 202. tealight Lv 1 8 pts. 9,181
  3. Avatar for timroberts16 203. timroberts16 Lv 1 8 pts. 9,178
  4. Avatar for kimmel_8088 204. kimmel_8088 Lv 1 8 pts. 9,157
  5. Avatar for ncm25_OLD 205. ncm25_OLD Lv 1 8 pts. 9,148
  6. Avatar for Tlaloc 206. Tlaloc Lv 1 8 pts. 9,145
  7. Avatar for lanmy 207. lanmy Lv 1 8 pts. 9,140
  8. Avatar for foldthestuffman 208. foldthestuffman Lv 1 8 pts. 9,138
  9. Avatar for stg123123 209. stg123123 Lv 1 8 pts. 9,137
  10. Avatar for nox1203 210. nox1203 Lv 1 7 pts. 9,127

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.