Placeholder image of a protein
Icon representing a puzzle

475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for Crunching Family 31. Crunching Family 1 pt. 8,566
  2. Avatar for Czech National Team 32. Czech National Team 1 pt. 8,418
  3. Avatar for Edugeek 33. Edugeek 1 pt. 8,406
  4. Avatar for Deleted group 34. Deleted group pts. 8,353
  5. Avatar for HMT heritage 35. HMT heritage 1 pt. 8,304
  6. Avatar for Deleted group 36. Deleted group pts. 7,917
  7. Avatar for Richard Dawkins Foundation 37. Richard Dawkins Foundation 1 pt. 7,851
  8. Avatar for Bree Fradley Manning 38. Bree Fradley Manning 1 pt. 7,835
  9. Avatar for Dutch Power Cows 39. Dutch Power Cows 1 pt. 7,646
  10. Avatar for DSN @ Home 40. DSN @ Home 1 pt. 7,520
  1. Avatar for aceofsabers 381. aceofsabers Lv 1 1 pt. 7,818
  2. Avatar for sebastien-c 382. sebastien-c Lv 1 1 pt. 7,813
  3. Avatar for mar_twa 383. mar_twa Lv 1 1 pt. 7,806
  4. Avatar for imakemyownluck 384. imakemyownluck Lv 1 1 pt. 7,804
  5. Avatar for ofc2000 385. ofc2000 Lv 1 1 pt. 7,778
  6. Avatar for sashish 386. sashish Lv 1 1 pt. 7,762
  7. Avatar for mottiger 387. mottiger Lv 1 1 pt. 7,760
  8. Avatar for bitt3r0blivion 388. bitt3r0blivion Lv 1 1 pt. 7,741
  9. Avatar for jonathon 389. jonathon Lv 1 1 pt. 7,731
  10. Avatar for Darkknight900 390. Darkknight900 Lv 1 1 pt. 7,728

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.