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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for Crunching Family 31. Crunching Family 1 pt. 8,566
  2. Avatar for Czech National Team 32. Czech National Team 1 pt. 8,418
  3. Avatar for Edugeek 33. Edugeek 1 pt. 8,406
  4. Avatar for Deleted group 34. Deleted group pts. 8,353
  5. Avatar for HMT heritage 35. HMT heritage 1 pt. 8,304
  6. Avatar for Deleted group 36. Deleted group pts. 7,917
  7. Avatar for Richard Dawkins Foundation 37. Richard Dawkins Foundation 1 pt. 7,851
  8. Avatar for Bree Fradley Manning 38. Bree Fradley Manning 1 pt. 7,835
  9. Avatar for Dutch Power Cows 39. Dutch Power Cows 1 pt. 7,646
  10. Avatar for DSN @ Home 40. DSN @ Home 1 pt. 7,520
  1. Avatar for rakha_rak 401. rakha_rak Lv 1 1 pt. 7,615
  2. Avatar for Holtrop J. 402. Holtrop J. Lv 1 1 pt. 7,603
  3. Avatar for ShinSakura 403. ShinSakura Lv 1 1 pt. 7,596
  4. Avatar for JeNNeR 404. JeNNeR Lv 1 1 pt. 7,568
  5. Avatar for nerhzul31600 405. nerhzul31600 Lv 1 1 pt. 7,549
  6. Avatar for connor.fortin 406. connor.fortin Lv 1 1 pt. 7,547
  7. Avatar for MrMom1003 407. MrMom1003 Lv 1 1 pt. 7,545
  8. Avatar for Wildman7186 408. Wildman7186 Lv 1 1 pt. 7,543
  9. Avatar for VicenteBarreto 409. VicenteBarreto Lv 1 1 pt. 7,539
  10. Avatar for ajflash 410. ajflash Lv 1 1 pt. 7,539

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.