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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for Crunching Family 31. Crunching Family 1 pt. 8,566
  2. Avatar for Czech National Team 32. Czech National Team 1 pt. 8,418
  3. Avatar for Edugeek 33. Edugeek 1 pt. 8,406
  4. Avatar for Deleted group 34. Deleted group pts. 8,353
  5. Avatar for HMT heritage 35. HMT heritage 1 pt. 8,304
  6. Avatar for Deleted group 36. Deleted group pts. 7,917
  7. Avatar for Richard Dawkins Foundation 37. Richard Dawkins Foundation 1 pt. 7,851
  8. Avatar for Bree Fradley Manning 38. Bree Fradley Manning 1 pt. 7,835
  9. Avatar for Dutch Power Cows 39. Dutch Power Cows 1 pt. 7,646
  10. Avatar for DSN @ Home 40. DSN @ Home 1 pt. 7,520
  1. Avatar for smith92clone 471. smith92clone Lv 1 1 pt. 6,639
  2. Avatar for wenskye 472. wenskye Lv 1 1 pt. 6,391
  3. Avatar for shohinsai 473. shohinsai Lv 1 1 pt. 3,283
  4. Avatar for Silozius 474. Silozius Lv 1 1 pt. 2,289
  5. Avatar for dmitry-gogol 475. dmitry-gogol Lv 1 1 pt. 2,284
  6. Avatar for natech 476. natech Lv 1 1 pt. 1,707
  7. Avatar for markoturbo 477. markoturbo Lv 1 1 pt. 1,652
  8. Avatar for MMW.2701 478. MMW.2701 Lv 1 1 pt. 1,621
  9. Avatar for Snarik 479. Snarik Lv 1 1 pt. 1,577
  10. Avatar for Qaisha 480. Qaisha Lv 1 1 pt. 1,575

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.