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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for Crunching Family 31. Crunching Family 1 pt. 8,566
  2. Avatar for Czech National Team 32. Czech National Team 1 pt. 8,418
  3. Avatar for Edugeek 33. Edugeek 1 pt. 8,406
  4. Avatar for Deleted group 34. Deleted group pts. 8,353
  5. Avatar for HMT heritage 35. HMT heritage 1 pt. 8,304
  6. Avatar for Deleted group 36. Deleted group pts. 7,917
  7. Avatar for Richard Dawkins Foundation 37. Richard Dawkins Foundation 1 pt. 7,851
  8. Avatar for Bree Fradley Manning 38. Bree Fradley Manning 1 pt. 7,835
  9. Avatar for Dutch Power Cows 39. Dutch Power Cows 1 pt. 7,646
  10. Avatar for DSN @ Home 40. DSN @ Home 1 pt. 7,520
  1. Avatar for Jim Fraser 51. Jim Fraser Lv 1 60 pts. 9,869
  2. Avatar for TheGUmmer 52. TheGUmmer Lv 1 59 pts. 9,849
  3. Avatar for soaddict 53. soaddict Lv 1 59 pts. 9,849
  4. Avatar for RabidNimravid 54. RabidNimravid Lv 1 58 pts. 9,839
  5. Avatar for LUKE1967 55. LUKE1967 Lv 1 57 pts. 9,837
  6. Avatar for Cfence 56. Cfence Lv 1 57 pts. 9,833
  7. Avatar for B_2 57. B_2 Lv 1 56 pts. 9,829
  8. Avatar for fishercat 58. fishercat Lv 1 55 pts. 9,826
  9. Avatar for randomlil 59. randomlil Lv 1 55 pts. 9,826
  10. Avatar for brow42 60. brow42 Lv 1 54 pts. 9,825

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.