Placeholder image of a protein
Icon representing a puzzle

475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Intermediate Intermediate Intermediate Intermediate Intermediate Intermediate Intermediate Intermediate Overall Overall Overall Overall Overall Overall Overall Overall Overall Prediction Prediction Prediction Prediction Prediction Prediction Prediction Prediction Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for SETIKAH@KOREA 41. SETIKAH@KOREA 1 pt. 7,512
  2. Avatar for name_in_progress 42. name_in_progress 1 pt. 7,096
  1. Avatar for damotbe 101. damotbe Lv 1 34 pts. 9,621
  2. Avatar for Fixxitguy 102. Fixxitguy Lv 1 33 pts. 9,618
  3. Avatar for xpresi 103. xpresi Lv 1 33 pts. 9,613
  4. Avatar for erikviking 104. erikviking Lv 1 32 pts. 9,610
  5. Avatar for tallguy-13088 105. tallguy-13088 Lv 1 32 pts. 9,609
  6. Avatar for jermainiac 106. jermainiac Lv 1 32 pts. 9,607
  7. Avatar for Deleted player 107. Deleted player pts. 9,607
  8. Avatar for Helmke 108. Helmke Lv 1 31 pts. 9,606
  9. Avatar for yoyo washington 109. yoyo washington Lv 1 31 pts. 9,597
  10. Avatar for Eachus 110. Eachus Lv 1 30 pts. 9,578

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.