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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for SETIKAH@KOREA 41. SETIKAH@KOREA 1 pt. 7,512
  2. Avatar for name_in_progress 42. name_in_progress 1 pt. 7,096
  1. Avatar for kabubi 141. kabubi Lv 1 20 pts. 9,503
  2. Avatar for dkmfan 142. dkmfan Lv 1 20 pts. 9,502
  3. Avatar for Auntiesocial 143. Auntiesocial Lv 1 20 pts. 9,477
  4. Avatar for manu8170 144. manu8170 Lv 1 19 pts. 9,477
  5. Avatar for Sissue 145. Sissue Lv 1 19 pts. 9,474
  6. Avatar for shettler 146. shettler Lv 1 19 pts. 9,471
  7. Avatar for naphead 147. naphead Lv 1 19 pts. 9,467
  8. Avatar for Mike Cassidy 148. Mike Cassidy Lv 1 18 pts. 9,466
  9. Avatar for PRL 149. PRL Lv 1 18 pts. 9,463
  10. Avatar for lguldur 150. lguldur Lv 1 18 pts. 9,460

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.