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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for SETIKAH@KOREA 41. SETIKAH@KOREA 1 pt. 7,512
  2. Avatar for name_in_progress 42. name_in_progress 1 pt. 7,096
  1. Avatar for gdnskye 11. gdnskye Lv 1 91 pts. 10,124
  2. Avatar for smilingone 12. smilingone Lv 1 90 pts. 10,123
  3. Avatar for spmm 13. spmm Lv 1 89 pts. 10,111
  4. Avatar for Grom 14. Grom Lv 1 88 pts. 10,111
  5. Avatar for Ch Garnier 15. Ch Garnier Lv 1 87 pts. 10,105
  6. Avatar for johnmitch 16. johnmitch Lv 1 87 pts. 10,094
  7. Avatar for frood66 17. frood66 Lv 1 86 pts. 10,083
  8. Avatar for jhullaert 18. jhullaert Lv 1 85 pts. 10,066
  9. Avatar for steveB 19. steveB Lv 1 84 pts. 10,058
  10. Avatar for mat747 20. mat747 Lv 1 83 pts. 10,057

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.