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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for SETIKAH@KOREA 41. SETIKAH@KOREA 1 pt. 7,512
  2. Avatar for name_in_progress 42. name_in_progress 1 pt. 7,096
  1. Avatar for tjohnson 211. tjohnson Lv 1 7 pts. 9,116
  2. Avatar for tg90nor 212. tg90nor Lv 1 7 pts. 9,112
  3. Avatar for DarkTigrou 213. DarkTigrou Lv 1 7 pts. 9,111
  4. Avatar for pmlkjn 214. pmlkjn Lv 1 7 pts. 9,105
  5. Avatar for knickknack 215. knickknack Lv 1 7 pts. 9,098
  6. Avatar for harp 216. harp Lv 1 7 pts. 9,096
  7. Avatar for can1492 217. can1492 Lv 1 7 pts. 9,094
  8. Avatar for Amartinek 218. Amartinek Lv 1 7 pts. 9,090
  9. Avatar for andromeda72 219. andromeda72 Lv 1 6 pts. 9,073
  10. Avatar for CaptainVolkan 220. CaptainVolkan Lv 1 6 pts. 9,055

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.