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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for SETIKAH@KOREA 41. SETIKAH@KOREA 1 pt. 7,512
  2. Avatar for name_in_progress 42. name_in_progress 1 pt. 7,096
  1. Avatar for LeafSB 271. LeafSB Lv 1 3 pts. 8,756
  2. Avatar for impixi 272. impixi Lv 1 3 pts. 8,749
  3. Avatar for Sadler 273. Sadler Lv 1 3 pts. 8,741
  4. Avatar for GracielaW 274. GracielaW Lv 1 3 pts. 8,741
  5. Avatar for philcalhoun 275. philcalhoun Lv 1 3 pts. 8,731
  6. Avatar for willad 276. willad Lv 1 2 pts. 8,731
  7. Avatar for Sylva 277. Sylva Lv 1 2 pts. 8,711
  8. Avatar for Foogleplex 278. Foogleplex Lv 1 2 pts. 8,695
  9. Avatar for WDWJohnSOrlando 279. WDWJohnSOrlando Lv 1 2 pts. 8,689
  10. Avatar for martinf 280. martinf Lv 1 2 pts. 8,688

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.