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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for SETIKAH@KOREA 41. SETIKAH@KOREA 1 pt. 7,512
  2. Avatar for name_in_progress 42. name_in_progress 1 pt. 7,096
  1. Avatar for jobo0502 21. jobo0502 Lv 1 82 pts. 10,052
  2. Avatar for Prime Lemur 22. Prime Lemur Lv 1 81 pts. 10,048
  3. Avatar for gmn 23. gmn Lv 1 81 pts. 10,047
  4. Avatar for Flagg65a 24. Flagg65a Lv 1 80 pts. 10,044
  5. Avatar for Rav3n_pl 25. Rav3n_pl Lv 1 79 pts. 10,044
  6. Avatar for saksoft2 26. saksoft2 Lv 1 78 pts. 10,039
  7. Avatar for bertro 27. bertro Lv 1 77 pts. 10,033
  8. Avatar for NinjaGreg 28. NinjaGreg Lv 1 76 pts. 10,019
  9. Avatar for BlinkyWatts 29. BlinkyWatts Lv 1 76 pts. 10,009
  10. Avatar for Tony Origami 30. Tony Origami Lv 1 75 pts. 10,001

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.