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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for SETIKAH@KOREA 41. SETIKAH@KOREA 1 pt. 7,512
  2. Avatar for name_in_progress 42. name_in_progress 1 pt. 7,096
  1. Avatar for Crutan 291. Crutan Lv 1 2 pts. 8,620
  2. Avatar for johngran 292. johngran Lv 1 2 pts. 8,618
  3. Avatar for Cimmerian 293. Cimmerian Lv 1 2 pts. 8,592
  4. Avatar for PrettyPony34 294. PrettyPony34 Lv 1 2 pts. 8,582
  5. Avatar for Barmy 295. Barmy Lv 1 2 pts. 8,576
  6. Avatar for Deleted player 296. Deleted player 2 pts. 8,575
  7. Avatar for glaciall 297. glaciall Lv 1 2 pts. 8,568
  8. Avatar for Seneca 298. Seneca Lv 1 2 pts. 8,566
  9. Avatar for nmeddy@hotmail.com 299. nmeddy@hotmail.com Lv 1 2 pts. 8,555
  10. Avatar for jeffbloor 300. jeffbloor Lv 1 2 pts. 8,550

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.