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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for SETIKAH@KOREA 41. SETIKAH@KOREA 1 pt. 7,512
  2. Avatar for name_in_progress 42. name_in_progress 1 pt. 7,096
  1. Avatar for jeshyr 311. jeshyr Lv 1 1 pt. 8,436
  2. Avatar for Lumir 312. Lumir Lv 1 1 pt. 8,418
  3. Avatar for alwen 313. alwen Lv 1 1 pt. 8,416
  4. Avatar for hada 314. hada Lv 1 1 pt. 8,413
  5. Avatar for amblay 315. amblay Lv 1 1 pt. 8,410
  6. Avatar for browolf 316. browolf Lv 1 1 pt. 8,406
  7. Avatar for callmeAKA 317. callmeAKA Lv 1 1 pt. 8,406
  8. Avatar for poiuytrewq 318. poiuytrewq Lv 1 1 pt. 8,401
  9. Avatar for frostschutz 319. frostschutz Lv 1 1 pt. 8,396
  10. Avatar for youglouglou 320. youglouglou Lv 1 1 pt. 8,387

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.