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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Intermediate Intermediate Intermediate Intermediate Intermediate Intermediate Intermediate Intermediate Overall Overall Overall Overall Overall Overall Overall Overall Overall Prediction Prediction Prediction Prediction Prediction Prediction Prediction Prediction Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for SETIKAH@KOREA 41. SETIKAH@KOREA 1 pt. 7,512
  2. Avatar for name_in_progress 42. name_in_progress 1 pt. 7,096
  1. Avatar for emcniel 441. emcniel Lv 1 1 pt. 7,508
  2. Avatar for alecrico 442. alecrico Lv 1 1 pt. 7,508
  3. Avatar for Drachen36 443. Drachen36 Lv 1 1 pt. 7,508
  4. Avatar for guido09 444. guido09 Lv 1 1 pt. 7,508
  5. Avatar for lipaipah 445. lipaipah Lv 1 1 pt. 7,508
  6. Avatar for TimothyPatrick 446. TimothyPatrick Lv 1 1 pt. 7,508
  7. Avatar for Deleted player 447. Deleted player pts. 7,508
  8. Avatar for 00-Evan 448. 00-Evan Lv 1 1 pt. 7,508
  9. Avatar for Onixya 449. Onixya Lv 1 1 pt. 7,508
  10. Avatar for vouwenmaar 450. vouwenmaar Lv 1 1 pt. 7,506

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.