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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for SETIKAH@KOREA 41. SETIKAH@KOREA 1 pt. 7,512
  2. Avatar for name_in_progress 42. name_in_progress 1 pt. 7,096
  1. Avatar for Lang Christopher 461. Lang Christopher Lv 1 1 pt. 7,402
  2. Avatar for TuraLove 462. TuraLove Lv 1 1 pt. 7,389
  3. Avatar for some guy 463. some guy Lv 1 1 pt. 7,351
  4. Avatar for Bluefire526 464. Bluefire526 Lv 1 1 pt. 7,321
  5. Avatar for davidmt1 465. davidmt1 Lv 1 1 pt. 7,274
  6. Avatar for alpengaudi 466. alpengaudi Lv 1 1 pt. 7,096
  7. Avatar for sftgfop1 467. sftgfop1 Lv 1 1 pt. 6,814
  8. Avatar for struis 468. struis Lv 1 1 pt. 6,798
  9. Avatar for Emiel 469. Emiel Lv 1 1 pt. 6,721
  10. Avatar for balb26 470. balb26 Lv 1 1 pt. 6,650

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.