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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for SETIKAH@KOREA 41. SETIKAH@KOREA 1 pt. 7,512
  2. Avatar for name_in_progress 42. name_in_progress 1 pt. 7,096
  1. Avatar for tasre 481. tasre Lv 1 1 pt. 1,573
  2. Avatar for ajvizzone 482. ajvizzone Lv 1 1 pt. 1,572
  3. Avatar for Hanto_FZ140E_4G 483. Hanto_FZ140E_4G Lv 1 1 pt. 1,572
  4. Avatar for Pantoffeltier _weihenstephan 484. Pantoffeltier _weihenstephan Lv 1 1 pt. 1,572
  5. Avatar for szotolyk 485. szotolyk Lv 1 1 pt. 1,572
  6. Avatar for Bentlogic 486. Bentlogic Lv 1 1 pt. 1,572
  7. Avatar for trab122 487. trab122 Lv 1 1 pt. 1,572
  8. Avatar for kbob 488. kbob Lv 1 1 pt. 1,572
  9. Avatar for MEFreed 489. MEFreed Lv 1 1 pt. 1,572
  10. Avatar for chibixi 490. chibixi Lv 1 1 pt. 1,572

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.