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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for SETIKAH@KOREA 41. SETIKAH@KOREA 1 pt. 7,512
  2. Avatar for name_in_progress 42. name_in_progress 1 pt. 7,096
  1. Avatar for narono 491. narono Lv 1 1 pt. 1,572
  2. Avatar for rileya 492. rileya Lv 1 1 pt. 1,572
  3. Avatar for mikmae 493. mikmae Lv 1 1 pt. 1,572
  4. Avatar for foldingforacure 494. foldingforacure Lv 1 1 pt. 1,572
  5. Avatar for meson800 495. meson800 Lv 1 1 pt. 1,572
  6. Avatar for elizabeth.higgins 496. elizabeth.higgins Lv 1 1 pt. 1,572
  7. Avatar for Getoo41985 497. Getoo41985 Lv 1 1 pt. 1,572
  8. Avatar for rage1366 498. rage1366 Lv 1 1 pt. 1,572
  9. Avatar for elimede 499. elimede Lv 1 1 pt. 1,572
  10. Avatar for Dakdadaah 500. Dakdadaah Lv 1 1 pt. 1,572

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.