Placeholder image of a protein
Icon representing a puzzle

475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for SETIKAH@KOREA 41. SETIKAH@KOREA 1 pt. 7,512
  2. Avatar for name_in_progress 42. name_in_progress 1 pt. 7,096
  1. Avatar for Hazelton 61. Hazelton Lv 1 54 pts. 9,820
  2. Avatar for bendbob 62. bendbob Lv 1 53 pts. 9,811
  3. Avatar for Roseanna 63. Roseanna Lv 1 52 pts. 9,803
  4. Avatar for dembones 64. dembones Lv 1 52 pts. 9,787
  5. Avatar for Datstandin 65. Datstandin Lv 1 51 pts. 9,782
  6. Avatar for phi16 66. phi16 Lv 1 51 pts. 9,776
  7. Avatar for treblasnirp 67. treblasnirp Lv 1 50 pts. 9,775
  8. Avatar for Madde 68. Madde Lv 1 50 pts. 9,765
  9. Avatar for heather-1 69. heather-1 Lv 1 49 pts. 9,762
  10. Avatar for rsosborne 70. rsosborne Lv 1 48 pts. 9,761

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.