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475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for SETIKAH@KOREA 41. SETIKAH@KOREA 1 pt. 7,512
  2. Avatar for name_in_progress 42. name_in_progress 1 pt. 7,096
  1. Avatar for ptfrog 81. ptfrog Lv 1 43 pts. 9,712
  2. Avatar for Bletchley Park 82. Bletchley Park Lv 1 42 pts. 9,711
  3. Avatar for jamiexq 83. jamiexq Lv 1 42 pts. 9,710
  4. Avatar for Vman 84. Vman Lv 1 41 pts. 9,708
  5. Avatar for jfryk 85. jfryk Lv 1 41 pts. 9,706
  6. Avatar for jlangsdo 86. jlangsdo Lv 1 40 pts. 9,702
  7. Avatar for anthunk 87. anthunk Lv 1 40 pts. 9,691
  8. Avatar for mimi 88. mimi Lv 1 39 pts. 9,686
  9. Avatar for Leonardo_C 89. Leonardo_C Lv 1 39 pts. 9,682
  10. Avatar for cbwest 90. cbwest Lv 1 38 pts. 9,677

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.